NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006733

3300006733: Marine viral communities from Cariaco Basin, Caribbean Sea - 26B_WHOI_OMZ_CsCl



Overview

Basic Information
IMG/M Taxon OID3300006733 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0067852 | Gp0122836 | Ga0098068
Sample NameMarine viral communities from Cariaco Basin, Caribbean Sea - 26B_WHOI_OMZ_CsCl
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size170224566
Sequencing Scaffolds26
Novel Protein Genes27
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available18
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes communis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationCaribbean Sea: Cariaco Basin
CoordinatesLat. (o)10.847Long. (o)-65.114Alt. (m)N/ADepth (m)900
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007072Metagenome358Y
F008501Metagenome332Y
F029285Metagenome / Metatranscriptome189Y
F039402Metagenome / Metatranscriptome164Y
F042291Metagenome158Y
F044014Metagenome155Y
F050310Metagenome145Y
F053539Metagenome141Y
F057299Metagenome / Metatranscriptome136Y
F060838Metagenome / Metatranscriptome132Y
F073445Metagenome / Metatranscriptome120Y
F077964Metagenome117Y
F078611Metagenome116Y
F085587Metagenome111Y
F090276Metagenome108Y
F092306Metagenome / Metatranscriptome107Y
F098033Metagenome104N
F099149Metagenome / Metatranscriptome103Y
F103103Metagenome101Y
F105003Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0098068_1000058Not Available47840Open in IMG/M
Ga0098068_1000101Not Available36922Open in IMG/M
Ga0098068_1000225All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon23766Open in IMG/M
Ga0098068_1000280Not Available21227Open in IMG/M
Ga0098068_1000357All Organisms → cellular organisms → Bacteria18608Open in IMG/M
Ga0098068_1000620Not Available13764Open in IMG/M
Ga0098068_1000665Not Available13237Open in IMG/M
Ga0098068_1000685Not Available12945Open in IMG/M
Ga0098068_1001318Not Available9008Open in IMG/M
Ga0098068_1001371Not Available8848Open in IMG/M
Ga0098068_1002533Not Available6137Open in IMG/M
Ga0098068_1005141All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium3836Open in IMG/M
Ga0098068_1006401Not Available3328Open in IMG/M
Ga0098068_1010675Not Available2331Open in IMG/M
Ga0098068_1017287All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium1641Open in IMG/M
Ga0098068_1017929Not Available1600Open in IMG/M
Ga0098068_1024809All Organisms → cellular organisms → Bacteria1270Open in IMG/M
Ga0098068_1026423Not Available1216Open in IMG/M
Ga0098068_1029430All Organisms → Viruses → Predicted Viral1128Open in IMG/M
Ga0098068_1032441Not Available1051Open in IMG/M
Ga0098068_1035280All Organisms → cellular organisms → Bacteria990Open in IMG/M
Ga0098068_1036590Not Available966Open in IMG/M
Ga0098068_1046172Not Available819Open in IMG/M
Ga0098068_1059448All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes communis688Open in IMG/M
Ga0098068_1075751Not Available583Open in IMG/M
Ga0098068_1084383Not Available542Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0098068_1000058Ga0098068_10000589F044014MNEDYKPRFSFEITEEQKFRADKLLDTYGLRKAIFGRILDDVLDIIEEYGGMAIGVMMKGKPREIIPSIKGVEEVGKK*
Ga0098068_1000101Ga0098068_100010126F103103MPCVSLPSGKQGVPDGVICGFHPVYEFDGYLFEVHRYHGPTPLRRKDHEPRLNIPAGFWDMWKVFDALPDAAKRACLFKED*
Ga0098068_1000225Ga0098068_100022540F078611MVNRTTINIDKEIRDELNKCKKYKRETYDETLKRLIKDKKRLQKAQ*
Ga0098068_1000280Ga0098068_100028031F007072VENKKGQLTIGDAPNVVLIIGLVFLTMATIAFISEKYGDALTENSTAYNVTQDLESEIGDNTSIAGIVLTISLVGIVLTVLIGIFVGFRGRV*
Ga0098068_1000357Ga0098068_10003574F085587MALGIEQIDDFVAGIHQKFAGEDRLAAQDISLPLQEYKYASRLFSGNLKKDTMSTSQCKWKVKVDTNDNFQVVGLYHKDTTGRVNVLSEGELKWGLTTNNYHYDIDEEIFQTGGRQIYDYLESLESDLMTSFYTGMEDVIFGAGPAASTTSPFPPVSLLWWITATDDSTSENNSEEGFDGFEPVGWSSAGVGGISCTTYEQWRNRTFPYTNVERDDFVEKTINSMDLCQFQPPVQRPDIVDQTRHDWELLTTHSRVAAGRRLLQLGNDNIGDDMAAHSGTVYIRGVPMNWVPAWTNSASANARTDGVILGVNWASFKCYYAQGRQMRKRKAFQHPEMSNVRVRCMDDSVQLVCFNRRSNFRGYCTATVTETA*
Ga0098068_1000620Ga0098068_100062011F050310MPNMQAFIVGIVVVGITLVIGIYIAAQIGATMTAGSAERNASDEIVTALSNGTSWITILVVVGFAVIVLGMLTSGLGRAAEGVGPVY*
Ga0098068_1000665Ga0098068_100066521F090276MNNKGNIMLSLLFFIMALGILVVFISPINDFLDIAQQSDNLNCKGFIYDGSSTNTLSFNDTKHNNVSGSPLACLAIKLYLPYILLVFLIGGLGSVLAGKGADLIGIGGDRGY*
Ga0098068_1000685Ga0098068_100068537F008501MQEMLVKKPAVDLTDLAIGIVVLGIVVSIGATILINVRDTSTANTTAYNLSQDAATGLAEYGNWFDIIVIVGVAAVVLSLIFMAFGGRTGGTGTSY*
Ga0098068_1001318Ga0098068_100131828F105003MKNENEIGQENYRKLIYFFENKIKVHFKNFDEIFYNGLIIDLDGKKLCMVFKERIRGTLPILLECVNPDSIAEFKEEGE*
Ga0098068_1001371Ga0098068_100137110F057299MAENTIGEKELRTDWDELTASDSTKDVGHEQTLVAEEGSLVPQRKKVGLQ*
Ga0098068_1002533Ga0098068_10025333F039402MLTDYSDLEKEIAEAPEPKILPRGTEVKARIIGVREGISEKNDAQWYQPVFDVPAEPLVLEFNGFLWDLKDRDKLSPKMAARALSDFHKFAAAFNLDYSKPFDWVDDLIGLEGWVILGVKKSDEYGDQNTISKYVAGK*
Ga0098068_1002533Ga0098068_10025338F044014MPDTGEYKPRFSFEITEEQQQRANKLLATYGLRKAIFGRILEDVLDMIDEFGGVAIGVMMSGKLKPRDVISSMKQAEEVGKK*
Ga0098068_1005141Ga0098068_10051415F057299MTNTKGEKELKTDWDELTASDSTKAVGHEQTLVAEEGTFVPRRNRVGI*
Ga0098068_1006401Ga0098068_10064017F042291MPIFQAYNKRNKAWVKYKFTRRGWKALDVKQKNPKKPFKGIQIRGKRRK*
Ga0098068_1010675Ga0098068_10106755F007072MCYEALGKAELFHERGLILKMQKLKSRRGQLTLSDAPQVILIVGLVFLIMATIAFIGAEYGDALTDGSVAQNVTTDLNTEISNNTSIAGIVLTISLVGIVLTVLIGIFVGFRSRNI*
Ga0098068_1017287Ga0098068_10172872F092306MTEPNTFQGHPYQQSSDPFLPMEVQESDCWPVDDRSVSTTKDQLADGLHPVIAIGGMTEADGRPLNVTGVVITIQVTTAGTPTDRVVVNTADGTIVHQYVSNILTYSGGAPNTFEQTPVVGYPVYVDDSDDLSEGVTLSMSPFNTAGLPNPLAGHLWYCQDEIADGQAGGERATSTFDTALPNEATEQSYCIRLSSGMHHEAAA*
Ga0098068_1017929Ga0098068_10179292F099149MLVGVLISIMIAIVVGVNLVPSIVEAVNTASNTPNAATGLDGMLDVLEYVYVAVILLGAVAWIGGQS*
Ga0098068_1024809Ga0098068_10248093F098033MITVDSSVIKLTVEGGSLSDWNGANEIVAATEHHGKWLLVNSKGLIFSIELDKLSPPPKVIKPEPKPIEVKPEENNHREAPAEKPKVPKLPKQGRYATTKPRVNSSQE*
Ga0098068_1026423Ga0098068_10264234F060838MTMQYVLPTEEQKELMQKFRDKYETLYGELKELEASRGLSLALTKLEESAFWLNKSITKND*
Ga0098068_1029430Ga0098068_10294302F057299MANNTIGEKELRTDWDELTASDSTKYVGHEQSLVPTEGSLVNRNWKKGL*
Ga0098068_1032441Ga0098068_10324414F042291MPIFQAYNKRNKAWVKYKFTRRGWKALDVKQKNPKKPFKGIQIRGKRR*
Ga0098068_1035280Ga0098068_10352803F053539MKSLFKDGTMFMITYTPQTIGGEVNKDKRHITRRGKWDMKCKFNESYILYFDRDRGNYRYASNKLAPIHISVGLNKEEMKAIN*
Ga0098068_1036590Ga0098068_10365901F044014MTDEDYRPRFSFEITEEQKQRADKLLDTYGLRKAIFGKVLDDILDLIEDYGGIAIGIMMSGKSKPRDVIPLMKRAEEVGER*
Ga0098068_1046172Ga0098068_10461723F029285MKDWADYSKYECPYKHLEKDVGHELHGPEGYADTYGVWCPCGFRGPVFYLDPKDLKLEKKRTAQPESEGDNG*
Ga0098068_1059448Ga0098068_10594481F077964MKKLLIITAIIFLLIPAMALAKTAESRTSPPTIQKIAPGVYYYNYNIQEIQKVPGGGGEAETFYQYNYVTIKGKPTKLKVQQAIAEASSSDDTAIVEEVAANRTIALERLANISAMTYAQINTHVENTFGNLSAAQKASLKKLYKAVLALIKQMDLE*
Ga0098068_1075751Ga0098068_10757512F073445MELKKAKKGVFNNLAALGVGIAALAITLVVVFLILSETAANTTVAADTNASAALDTLQQATDDIPGWVPLIVIAVIGAILLGLVAMFRR*
Ga0098068_1084383Ga0098068_10843832F105003MTKAKIAQDSYRKLIYFFENNIKIHFKDLDDIFYNGIIVDLNGDKLTMVLDEDVKGTMPILLEFINPESIRQFEVKGDDFLEKV*
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