Sample 3300006747

Overview

Basic Information
IMG/M Taxon OID	3300006747 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052563 \| Ga0101801
Sample Name	Human stool microbial communities from NIH, USA - visit 1, subject 160218816
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	118798596
Sequencing Scaffolds	6
Novel Protein Genes	6
Associated Families	5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F076064	Metagenome	118	N
F087336	Metagenome	110	N
F088920	Metagenome	109	Y
F089053	Metagenome	109	Y
F090515	Metagenome	108	N

Family

Category

Number of Sequences

3D Structure?

F076064

Metagenome

118

F087336

Metagenome

110

F088920

Metagenome

109

F089053

Metagenome

109

F090515

Metagenome

108

Scaffold	Taxonomy	Length	IMG/M Link
Ga0101801_100646	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	30782	Open in IMG/M
Ga0101801_100983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	21072	Open in IMG/M
Ga0101801_101148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	18102	Open in IMG/M
Ga0101801_103404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4711	Open in IMG/M
Ga0101801_103432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4669	Open in IMG/M
Ga0101801_106489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	2181	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0101801_100646

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii

30782

Open in IMG/M

Ga0101801_100983

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

21072

Open in IMG/M

Ga0101801_101148

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

18102

Open in IMG/M

Ga0101801_103404

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

4711

Open in IMG/M

Ga0101801_103432

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

4669

Open in IMG/M

Ga0101801_106489

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile

2181

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0101801_100646	Ga0101801_10064629	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYLRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY*
Ga0101801_100983	Ga0101801_10098316	F090515	VTTCCKAGPTAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS*
Ga0101801_101148	Ga0101801_1011486	F089053	MEGPRPDKFAFGVRIGRVVDGCRPAKGCIRKWIHGFAYGQPELSTAEEVNVKNMEVSL*
Ga0101801_103404	Ga0101801_1034042	F088920	VSARPHYYLAFGAGLILHLILHFSQKAAIFAPKQVILLLFVPTLFFAGLSVFFPQTSPKISGQTSLYLPWLSPYCLFKD*
Ga0101801_103432	Ga0101801_1034322	F088920	VSANLHHYPAFVAGLILHLILHFSQKVAIFAPKRAILLIFVPTLFFACLASFSLHISPKISGQTSLYQPWLSPYYLFKD*
Ga0101801_106489	Ga0101801_1064893	F087336	MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP*

Scaffold ID

Protein ID

Family

Sequence

Ga0101801_100646

Ga0101801_10064629

F076064

LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYLRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY*

Ga0101801_100983

Ga0101801_10098316

F090515

VTTCCKAGPTAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS*

Ga0101801_101148

Ga0101801_1011486

F089053

MEGPRPDKFAFGVRIGRVVDGCRPAKGCIRKWIHGFAYGQPELSTAEEVNVKNMEVSL*

Ga0101801_103404

Ga0101801_1034042

F088920

VSARPHYYLAFGAGLILHLILHFSQKAAIFAPKQVILLLFVPTLFFAGLSVFFPQTSPKISGQTSLYLPWLSPYCLFKD*

Ga0101801_103432

Ga0101801_1034322

F088920

VSANLHHYPAFVAGLILHLILHFSQKVAIFAPKRAILLIFVPTLFFACLASFSLHISPKISGQTSLYQPWLSPYYLFKD*

Ga0101801_106489

Ga0101801_1064893

F087336

MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006747: Human stool microbial communities from NIH, USA - visit 1, subject 160218816

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences