NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006836

3300006836: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 861967750



Overview

Basic Information
IMG/M Taxon OID3300006836 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052567 | Ga0101916
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 861967750
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size55131681
Sequencing Scaffolds7
Novel Protein Genes12
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F036281Metagenome170N
F043991Metagenome155N
F051214Metagenome144N
F067847Metagenome125N
F071329Metagenome122N
F074985Metagenome119N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0101916_1000434All Organisms → Viruses → Predicted Viral2664Open in IMG/M
Ga0101916_1000782All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1899Open in IMG/M
Ga0101916_1001225All Organisms → Viruses → Predicted Viral1500Open in IMG/M
Ga0101916_1001964All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1219Open in IMG/M
Ga0101916_1003414All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes944Open in IMG/M
Ga0101916_1003956All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes882Open in IMG/M
Ga0101916_1005034All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes770Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0101916_1000434Ga0101916_10004344F074985MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRIYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSNFEELYIDQTFRRLTPVIFRHFDHSWIVMGLELSDSEEAEWFIYLKRQNGEGMTRVHFTKDQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID*
Ga0101916_1000434Ga0101916_10004345F036281MISLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEDRKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREIGHWYTFRMSDDQKSRFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0101916_1000434Ga0101916_10004346F027205LKAVKESEEFERKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK*
Ga0101916_1000782Ga0101916_10007821F071329IISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIDIED*
Ga0101916_1000782Ga0101916_10007822F051214MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYICNNREYQIACEFLRQIMHDKIDLKDEWIA*
Ga0101916_1000782Ga0101916_10007823F043991MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0101916_1001225Ga0101916_10012252F043991MSEKTHSAIDYFDPNGNLNEEAHEFEGVKLEDYIDKRSSFKPSWIGRYSEQMHFDLESGVEVSFYRQLDIVYADILFYEGIRTILFKCRQKKNLTRFISRVLELAQGEPKNIHPDFRA*
Ga0101916_1001225Ga0101916_10012254F071329MLPVAKIIISGLSSIGAGMIASRLTKPLVSNANGIAKILLWFGSVGTGVAASAIVSREVELQFDATVKAVQEARDHVEIED*
Ga0101916_1001964Ga0101916_10019642F067847MFTHIVRVKGFFDDEPKAKKLYFHLSRREMFDFILQYDNIKNFNEWVQSAIDAEDLYTLMEFFDDLIGSSYGERQGDHFVKTPQIKESFLNSPEYEKLFDEFMDNPGLVKQFYEGILPEKVMNQVKLDEKYSELEEKLKETEFKNL*
Ga0101916_1003414Ga0101916_10034142F018385MAENRWDPYAEVPIETHRDPVKDDHLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNELVFMPDSGRKIITQLFEKEVK*
Ga0101916_1003956Ga0101916_10039562F036281MITLIKVDDGPVDIYELRMQYLAKLKETDGVMLPTFIYRNRELFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDLKSKFTCHTMTNEKGHQTYDWVLENVEWAADVYRYF*
Ga0101916_1005034Ga0101916_10050342F018385MDEYVNQWESYKELSIENDRNPVLDDQVIYGNDVKHFTLTVYSPEGRVSKYWNTRILADDLGRCRIACPREGKILCFDWFKWTAYMFTHDGLNELVFMPGSSRKTISRLWCEEVK*
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