NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300006889

3300006889: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius crassitunicatus.2



Overview

Basic Information
IMG/M Taxon OID3300006889 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095504 | Gp0102452 | Ga0056107
Sample NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius crassitunicatus.2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size35580696
Sequencing Scaffolds4
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Eukaryota → Opisthokonta1
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Gutless Worms Symbiont Microbial Communities From Various Locations
TypeHost-Associated
TaxonomyHost-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001344Metagenome718Y
F003519Metagenome481Y
F027119Metagenome195Y
F085256Metagenome111Y
F104759Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0056107_101104All Organisms → cellular organisms → Eukaryota3045Open in IMG/M
Ga0056107_102939All Organisms → cellular organisms → Eukaryota → Opisthokonta1253Open in IMG/M
Ga0056107_106845Not Available675Open in IMG/M
Ga0056107_106889Not Available672Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0056107_101104Ga0056107_1011043F085256MQAAKKLVLVDPQFLQQFQKDREYKQIQKPADALARANLSLDIGKTLDDDTLADDRKVKNYLQTLNRYFQLTDEVPSSFTSKSNPLSEVKVKVKGKQKKRKRLPWLRY*
Ga0056107_102939Ga0056107_1029391F003519MLETYQKIHPKPTTIAELKEALQMIWDSLPQRPINKVVKNLPKRMKVCVKAESGHFEHSQ
Ga0056107_106845Ga0056107_1068452F001344VGAAAQDAARKKVDKYANLAETHLFYPFAIETGGAWHDLAIELVQEIGRRTTIVTEETRETTFLFQRLSIALQRGNAVAFLNTMIAE*
Ga0056107_106889Ga0056107_1068892F104759LGSILLATGIVFSTILFAYSLYRGAADAATVLGIINMLLISGGGLLGIGVFEKGINIERRCSKD*
Ga0056107_108522Ga0056107_1085222F027119MWNSLPNWVVSANTTDTFKSRIDKFWQNQDIVHNFRAQLQGTGSRSVLDN*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.