NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006915

3300006915: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius crassitunicatus.1



Overview

Basic Information
IMG/M Taxon OID3300006915 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095504 | Gp0102451 | Ga0056106
Sample NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius crassitunicatus.1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size47051381
Sequencing Scaffolds6
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota2
Not Available4

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Gutless Worms Symbiont Microbial Communities From Various Locations
TypeHost-Associated
TaxonomyHost-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000084Metagenome2468Y
F001144Metagenome765Y
F017605Metagenome239Y
F041287Metagenome / Metatranscriptome160Y
F042907Metagenome / Metatranscriptome157Y
F064438Metagenome128Y
F085256Metagenome111Y
F088366Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0056106_100788All Organisms → cellular organisms → Eukaryota4264Open in IMG/M
Ga0056106_101842Not Available2264Open in IMG/M
Ga0056106_104057Not Available1369Open in IMG/M
Ga0056106_104955Not Available1200Open in IMG/M
Ga0056106_108670All Organisms → cellular organisms → Eukaryota808Open in IMG/M
Ga0056106_111640Not Available655Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0056106_100788Ga0056106_1007883F085256MQAAKKLVLVDPQFLEQLKVDREYKQIQKPTETVAKTNLSLDIGKTLHNQSLSDDQKVKQYLQTLNRYLHVGREFPETLDVKPNPLSEVAVKRKKAQKNQRRRKTWVQY*
Ga0056106_101842Ga0056106_1018421F041287MEVCHKCGNPADYICPHCATKSCRIHMALRYLGPYRGFKSRYMCPKCWKTKQVMLNQNMINARRYKPKKYVFYKVPIIGR*
Ga0056106_104057Ga0056106_1040572F088366MTVMFEVLYCVDTDTVTVMLCDSFIFGSLAIWVTDDIEC*
Ga0056106_104955Ga0056106_1049552F042907MENQPIDVIEIDQYNDLRDKPCILCGEPYNHVLGSYSPEETKRSKNNNDKSPVLYYTLCEHCFNNGHIPTARIVDAYRRKFGKVAALVAV*
Ga0056106_106586Ga0056106_1065862F000084LILRKIIKIVATRCHILKLKCTKFDFGWGSAPDPAGGAYSAPPDPLAGFWGRFAAGKGE
Ga0056106_108670Ga0056106_1086702F064438MKTFIVSYGSEWHEMNRVCEVDMTGRMLKAFGSSPGEGVGQLNAPWHVSLDDEERIIVADYLNDRVLLLNKQLMLQRVLVTWDQRPLSDVVGAPARLHYDSHSGRLLVGLERGHLDIYQLCT*
Ga0056106_111640Ga0056106_1116401F001144MSTDSVLYDLTKSTSLQANMTDDSCRLEFIEIVPLTRDDDAPCETDCDSGYWPPESKQENLPVMKQEPENVCYVIFY*
Ga0056106_117630Ga0056106_1176301F017605MHANLLTHNSSKTEFLLIGLKKQLLKVNSHALNTSHSARNLG
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