NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007046

3300007046: Marine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co52is



Overview

Basic Information
IMG/M Taxon OID3300007046 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117787 | Gp0124752 | Ga0101662
Sample NameMarine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co52is
Sequencing StatusFinished
Sequencing CenterUniversity of New South Wales
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size58988803
Sequencing Scaffolds12
Novel Protein Genes12
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1
All Organisms → cellular organisms → Eukaryota9
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Clitellata → Hirudinea → Rhynchobdellida → Glossiphoniidae → Helobdella → Helobdella robusta1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSeawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
TypeHost-Associated
TaxonomyHost-Associated → Porifera → Unclassified → Unclassified → Unclassified → Coelocarteria Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUpa-Upasina ?bubble? site, Papua New Guinea
CoordinatesLat. (o)-9.8241Long. (o)150.825833Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041143Metagenome / Metatranscriptome160N
F085224Metagenome111N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0101662_107301All Organisms → cellular organisms → Bacteria1107Open in IMG/M
Ga0101662_109963All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium957Open in IMG/M
Ga0101662_113791All Organisms → cellular organisms → Eukaryota818Open in IMG/M
Ga0101662_116697All Organisms → cellular organisms → Eukaryota747Open in IMG/M
Ga0101662_117659All Organisms → cellular organisms → Eukaryota727Open in IMG/M
Ga0101662_120732All Organisms → cellular organisms → Eukaryota672Open in IMG/M
Ga0101662_124143All Organisms → cellular organisms → Eukaryota622Open in IMG/M
Ga0101662_124371All Organisms → cellular organisms → Eukaryota618Open in IMG/M
Ga0101662_124385All Organisms → cellular organisms → Eukaryota618Open in IMG/M
Ga0101662_128896All Organisms → cellular organisms → Eukaryota564Open in IMG/M
Ga0101662_129619All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Clitellata → Hirudinea → Rhynchobdellida → Glossiphoniidae → Helobdella → Helobdella robusta557Open in IMG/M
Ga0101662_135508All Organisms → cellular organisms → Eukaryota504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0101662_107301Ga0101662_1073011F085224LLRFKAIVMFPYSVWSGVMVELLQMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGERRAGGFSNVAYGKGSAPDPNDSVNREALHYWLEKSEWYNWDVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRNERWAEIKRDLTKTA*
Ga0101662_109963Ga0101662_1099632F041143MIDNPRISGIDWQGLQKGDLVPHHQVKEFFHSIFPDKEWDDFSMVKVIDKLMKLRETINRPLIIKEVYKDQSLRVLTDKESVDYSAQQANAGIKKHRRHTRRLFTHINKDNLDPAKQRELETKQIHHAFIASAADGARKESLQLQRKGERVPKSLIEKSDFKKSS*
Ga0101662_113791Ga0101662_1137911F085224GFSYQDLLRFKAIVMFPYSVFSGMMLELLEMGAPMFYPSKSLLKRWDEQYGIMTQRTSAEGKRSAGGFSNVAYGKDSAPDPNDSVNRDALHYWLEKAEWYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLSKSAAT*
Ga0101662_116697Ga0101662_1166972F085224DYGYRFLRIRRALQGFSYQDLTRFKAIVMFPYSTFSVVMLELIEMGVPMFYPSKRLLKRWDESYGMMFHRTNAFGERRAGGFSNIAYGADSAPDPNDSVNQDALHYWLDKAEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDARWAEIRRDLTKTNSTGV*
Ga0101662_117659Ga0101662_1176591F085224FKAVVMFPYSVFSGMMLELIQMGVPMFYPSKSLLKRWDEKYGMMFHRTNAFGERRAGGFSNIAYGANSAPDPNDSVNQEALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDARWAEIRRDLTKTSSTPA*
Ga0101662_120732Ga0101662_1207321F085224IKHPRPYLNYYRVRIRAALNGFSYQDLLRFKAIVMFPYSAFSGIMLELLEMGVPMFYPSKRLLKRWDESYGMMFQRTSGYGRRSAGGFSNIAYGKDLMPDPNDSVNREALHYWLDKSEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDKRWAEIKRDLTKTA*
Ga0101662_124143Ga0101662_1241432F085224MMFHRTHQFGQWRSAGGFSNIAYGADSAPDPNDSVNPDALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRNERWAEIKRDLTKTSSTPA*
Ga0101662_124371Ga0101662_1243712F085224DIRRARAYFSHHRHTIRRAFQAFSYRDLLRFKAVVMFPYSVWSGVMVELLQMGVPMFYPSKRLLKRWDESYGMMFHRTSAFGERRAGGLSNIAYGKSAMPDPNDGVNREALHYWLDKSEWYNWDVRYFDSPADLHEQLKAADFEAMHRDVLRTRARMDKIRDERWAEIKRDLTKTA*
Ga0101662_124385Ga0101662_1243851F085224QMGVPMFYPSKRLLKRWDESYGMMFHRTNAFGARRAGGLSNIAYGKGAMPDPNDGVNREALHYWLEKSEFYNWDVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRDERWAEIQRDLTKTA*
Ga0101662_128896Ga0101662_1288962F085224RFKAIVMFPYSAFSGIMLELIEMGVPMFYPSKRLLKRWDERHGMMFQRTGDLAQRSAGGFSNVAHGKDLMPDPNDSVNPEALHYWLEKSEWYNWDVRYFESPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLTKTA*
Ga0101662_129619Ga0101662_1296191F085224RAALNGFSYQDLLRFKAIVMFPYSAFSGIMLELIEMGVPMFYPSKRLLKRWDEIYGMMFQRTSGYGRRSSGGFSNIAYGKDLMPDPNDGVNREALHYWLEKSEWYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDERWAEIRRDLTKTSSTPA*
Ga0101662_135508Ga0101662_1355081F085224LLRFKAIVMFPYSVWSGVMVELLQMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGERRAGGFSNIAYGKGSAPDPNDGVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTA*
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