Basic Information | |
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IMG/M Taxon OID | 3300007070 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111485 | Gp0115599 | Ga0073929 |
Sample Name | Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC2 2012 metaG |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 206314244 |
Sequencing Scaffolds | 9 |
Novel Protein Genes | 9 |
Associated Families | 9 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 2 |
All Organisms → cellular organisms → Bacteria | 5 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | aquatic biome → hot spring → sediment |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
Location Information | ||||||||
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Location | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 49.9543 | Long. (o) | -116.5155 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001489 | Metagenome / Metatranscriptome | 686 | Y |
F018387 | Metagenome / Metatranscriptome | 235 | Y |
F024517 | Metagenome / Metatranscriptome | 205 | Y |
F028182 | Metagenome / Metatranscriptome | 192 | N |
F029547 | Metagenome / Metatranscriptome | 188 | Y |
F069779 | Metagenome / Metatranscriptome | 123 | Y |
F070985 | Metagenome | 122 | Y |
F081382 | Metagenome / Metatranscriptome | 114 | N |
F099502 | Metagenome / Metatranscriptome | 103 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0073929_1002403 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 12114 | Open in IMG/M |
Ga0073929_1003006 | All Organisms → cellular organisms → Bacteria | 9361 | Open in IMG/M |
Ga0073929_1003405 | All Organisms → cellular organisms → Bacteria | 8141 | Open in IMG/M |
Ga0073929_1006120 | All Organisms → cellular organisms → Bacteria | 4251 | Open in IMG/M |
Ga0073929_1013794 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1868 | Open in IMG/M |
Ga0073929_1014262 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1812 | Open in IMG/M |
Ga0073929_1014871 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1748 | Open in IMG/M |
Ga0073929_1016710 | All Organisms → cellular organisms → Bacteria | 1573 | Open in IMG/M |
Ga0073929_1023340 | All Organisms → cellular organisms → Bacteria | 1169 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0073929_1002403 | Ga0073929_10024038 | F018387 | VLGAEPPLLEQGSVQFILFGLMVLAIFVGLWITISK* |
Ga0073929_1003006 | Ga0073929_10030062 | F099502 | MTEKANQESALGTIIGWGSLGIFALWFAYQVAAPLLIGEQWAEKQNDAIELVKNSKPLGNETLYDMIRAYSLKAKENDFFVGEFSWSAIQKDGPEYEVTLLWTEGDQKKVALWRVNLENKEVRPQGDAASLPQRLAAGPPKKGTGS* |
Ga0073929_1003405 | Ga0073929_10034057 | F028182 | MRYDTHVMPKVSISEAARRFDTTKEVICAWIRLELLDMEPPPAKPRRTRELNLAFQPTSAAPEPKVDLKQLYEVAEEVGWLLLSLEAWDRADTETACRLSHTGTIPPP* |
Ga0073929_1006120 | Ga0073929_10061202 | F081382 | MSKHGEVLEIAILPAGGRAKQVVQRALGKRRAHIRVHNLCDIADASAPMLALIDGSALQGGESVLAEVITLLQQSAWRDAPIVILDDSGADLRRGFAAGYAARIRLDSSPEAIAQLIDRMMHTAV* |
Ga0073929_1013794 | Ga0073929_10137941 | F024517 | MYGLHTIQDVHRLVKAFAGVPDCFVPLKTRREISYPLSFRVPLSQVEEIDAAAAREKRKRRSDLLEAIWEVAWAEYKRAGSLEAYASGRRGRGYTRRVSEELQDQIFTAVELILERAPSA |
Ga0073929_1014262 | Ga0073929_10142622 | F069779 | MCRALKVLCVAEDAEGLAALKRAAVSAEWELAPGATEEAEALAQLHAERPHVVVVFGPFEGFVRAAREAYPFLRIVADRDLPGATVVATSLEEVRGAVKGLPRPGGPVR* |
Ga0073929_1014871 | Ga0073929_10148711 | F029547 | QYRITMDYLARRREELAGVVTHRLPLERIGEGFEAIRSGAALKVVIEP* |
Ga0073929_1016710 | Ga0073929_10167101 | F070985 | MTDIRGVGKRITYSEDNPITEWVHNLRKQRDGLKREPRDQAERELLARWLGYRGRDELETIVGSAAYALSHFEMDSEWRYILAEHMQTEAGHGWGYIQQANRIDPSRDHSQPDPAFVEQY |
Ga0073929_1023340 | Ga0073929_10233401 | F001489 | RDFLSYLFAGNLWPYGPCTAATIQSIMITTPEVLEFERRVVEAEEQEHHTAALQKLHDYVWELIERYGEDYVRKRIAEIDAAALNSGSRIIFDPPRRDFLRKYFNVPLENATRFFEFREYLYLNVLGFPPEPVHIKTWPAEVPQPSPAAV* |
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