NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007071

3300007071: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC8 2012 metaG



Overview

Basic Information
IMG/M Taxon OID3300007071 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111485 | Gp0115600 | Ga0073930
Sample NameHot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC8 2012 metaG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size249435303
Sequencing Scaffolds6
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationCanada: British Columbia
CoordinatesLat. (o)49.9543Long. (o)-116.5155Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001489Metagenome / Metatranscriptome686Y
F014457Metagenome263Y
F020112Metagenome226Y
F036417Metagenome / Metatranscriptome170Y
F045123Metagenome / Metatranscriptome153N
F046219Metagenome151Y
F071369Metagenome / Metatranscriptome122Y
F078344Metagenome / Metatranscriptome116N
F105479Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0073930_1013603All Organisms → cellular organisms → Bacteria2533Open in IMG/M
Ga0073930_1046543All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium853Open in IMG/M
Ga0073930_1046671All Organisms → cellular organisms → Bacteria851Open in IMG/M
Ga0073930_1058382All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon693Open in IMG/M
Ga0073930_1069414All Organisms → cellular organisms → Bacteria589Open in IMG/M
Ga0073930_1070818All Organisms → cellular organisms → Bacteria578Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0073930_1009536Ga0073930_10095362F046219LHKLDAAQSSEAGLLLRRALDLRAAVKLGIQITLDEIRADEFRAMVVLEEERDALDREQMNAHGR*
Ga0073930_1013603Ga0073930_10136033F078344LDEWAAFATQLTPIQLARAEGWIRLAGQPASHETLAPLENLVVALPALRFWASLSPQQRQAALNGERLLLERMTPQQRELFLQAFSRPLPDLVGVPLIKRYVHEDNYGSLSVRIGSQGETITMTTRIGDPPPPHFRIGRSVQRLDKPLITLLSKDGEEATQQGYSFSSLSEPSPGSPRGWLLYFAVDDWQRVYILVGE*
Ga0073930_1046543Ga0073930_10465431F036417MVYYARVPLRQRIPTVLVRLATDDGEVIFRARWKRSALELQRTILFRLRRGIPLWFEDEWGHDLCFRPERVWAAMVDGRPA*
Ga0073930_1046671Ga0073930_10466712F014457FGEAAKYFVATGWPGQPTPAAAEVVASNVLTDMAAKVIVDGWTVDQTLEWGDQKIKEIYESLGNR*
Ga0073930_1058382Ga0073930_10583821F020112MVSKAFRKCVDLIEEMLREGYRLQIPSTHVERLIKIHVGADKRTIQKYMKMLTEDLGFLENTAKNSLGIIIYRINIQTIEQHVSEHLKEKLRQLTLLDMRLKQ
Ga0073930_1063940Ga0073930_10639401F045123LYADVMLFQGDTPLVVVEVEGNARQQREGYEEARLKGAAWNLENPVPLLWVAAGNQDTLYQLQPRDAAIHYALLEGEPPDKLLAPARLLEAIGDYLRRTETEAGQELRYRDALQRALAESRGNSAHEKFRNWIDALAGVSARKRLPTPLREAQQMVRQARQSGQPNFALALALRHTARGYFRPLSRNDAVRRTGRYYTPTEVIQLMVESLA
Ga0073930_1069414Ga0073930_10694141F071369MDATRNIAGQFSRIADGAALRAISQAFATESGGYLTRNHMEIWADFAEQACGISRAELFAWEPPVETVGSGYVTKWFLVHCSPEEAVAAFHLGPPPAAKERLGKRALGIGQGGAAGEGLLQPQPGRHPLTQALERLGLNADLADYFFRLHREIEPFEQEEGWEYVPEVVRTGEQRQRFKRAYIEKILAE
Ga0073930_1070818Ga0073930_10708181F001489SQPDPEFSEQYGVYPSQAHAALMRRDFLSYLFAGNLWPYGPVTAATIQSILITTPQVLDFERRVVEAEERGHHDAALQKIHDYVWQLIDRYGEAYVRKRIAEIDEAALNAGSRIIFDPPRRDFLRKYFDVPLENTTRFLEYREYLYLNVLGFPPEPIYIKTWPKEIPQPTMAAV*
Ga0073930_1074246Ga0073930_10742461F105479EIYLDRAALWDAGLSAEDLAAFLADYRYGDNIGPYVRPEAIRRDRLSHRSFAAVLPTSFIAELARRDLSRYGETRYVEADPDGIPSL*
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