Sample 3300007097

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300007097

3300007097: Human stool microbial communities from NIH, USA - visit 2, subject 158924089

Overview

Basic Information
IMG/M Taxon OID	3300007097 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052574 \| Ga0102537
Sample Name	Human stool microbial communities from NIH, USA - visit 2, subject 158924089
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	72084855
Sequencing Scaffolds	2
Novel Protein Genes	2
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0102537_105751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2184	Open in IMG/M
Ga0102537_109219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1120	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102537_105751	Ga0102537_1057513	F026592	VPVGMAVLGVQGGVATLTERSDATFAGKQFSSADRE*
Ga0102537_109219	Ga0102537_1092191	F026592	SPQGIDAQASQGSVAPLTERSDETFSVGQFSSADWE*

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