NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007120

3300007120: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159369152



Overview

Basic Information
IMG/M Taxon OID3300007120 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052603 | Ga0102643
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 159369152
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size97394501
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F04321
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041827Metagenome159Y
F042387Metagenome158N
F054111Metagenome140N
F097526Metagenome104Y
F101359Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0102643_102290All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium6743Open in IMG/M
Ga0102643_105454All Organisms → cellular organisms → Bacteria3081Open in IMG/M
Ga0102643_109935All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F04321727Open in IMG/M
Ga0102643_111081All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1555Open in IMG/M
Ga0102643_117440All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium984Open in IMG/M
Ga0102643_119632All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium871Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0102643_102290Ga0102643_1022907F097526MTTDNTTAIAPYTQDGYRQLCERLDDDTVAALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSRLTRQCEQNGSCDTAIPLPRDDYGFAAAVRDFPLSETQTALLWRMALLTIAEIADIAPELAAIYLNGTGGEHLGRALVEKTVYPVTVVSNLAWLLHEQYKSGQLQRDLRHTAAASGLAGTEAMQAAVPVSRQQDGRQSS*
Ga0102643_105454Ga0102643_1054543F054111MNKPLESITHNEFLKLTERLKNLQEFTFLEYIIAPEADIFYFNFMEKTVKIKWDLDYGLFLETEALSTADRDLFLNILAPVVHLLIQ*
Ga0102643_109935Ga0102643_1099352F097526MTENSTMATTIYTQDDYRRLCERLEDDTVVVTLRAHIDAFAAKGNRVLLRRLTEGLRIAGEMEKAGRNGHPTPEEQARRERWDSNYGRLQQHARMAGDQITNADNAAVSRLTAQCERNGRCDTDTELSVARDDAYGFAAALRDIPLNEKQTALLWRMAVLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQQKSGQLQRDLRHITTALGSEVQGKPQ*
Ga0102643_111081Ga0102643_1110811F101359KKLIFKMKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSAANGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK*
Ga0102643_117440Ga0102643_1174401F041827SIMKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMAMDGPHGEASMDFEYDTYGRIVKERRFHHRSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNPKNTLRNMKGFPALVVEFYIRPFTYKLPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKRKSHDNDYLEIEEVNIYEKSHNDPTHDNYLSSASPARFYTKEK*
Ga0102643_119632Ga0102643_1196321F042387LFLVSCSRENDKMTDETLANNAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGNGDKVVFVYEKNFITSKIRYSQAGEELGKTNYQYSNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSGVSVNENVKYYSESYAYNLRDENSTHTYVLNGENITKIHHEISKNVPSGHSYLNPNNMVVIDEEVAYDAKNSPYKNIKGFSALATEFCGLDKDENTIADYLNYRWVSHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTITTMVYEYNK*
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