Sample 3300007161

3300007161: Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=8 metaT (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300007161 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0067861 \| Gp0123757 \| Ga0099839
Sample Name	Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=8 metaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	31213865
Sequencing Scaffolds	37
Novel Protein Genes	41
Associated Families	26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	6
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	4
Not Available	25
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.7315	Long. (^o)	-110.7113	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F011233	Metagenome / Metatranscriptome	293	N
F021133	Metagenome / Metatranscriptome	220	N
F021808	Metagenome / Metatranscriptome	217	Y
F022017	Metagenome / Metatranscriptome	216	N
F023140	Metagenome / Metatranscriptome	211	Y
F026924	Metagenome / Metatranscriptome	196	Y
F027904	Metagenome / Metatranscriptome	193	N
F033508	Metagenome / Metatranscriptome	177	Y
F040183	Metagenome / Metatranscriptome	162	N
F050482	Metagenome / Metatranscriptome	145	Y
F062912	Metagenome / Metatranscriptome	130	Y
F066922	Metagenome / Metatranscriptome	126	Y
F067921	Metagenome / Metatranscriptome	125	N
F071411	Metagenome / Metatranscriptome	122	Y
F073767	Metagenome / Metatranscriptome	120	N
F075083	Metagenome / Metatranscriptome	119	N
F080244	Metagenome / Metatranscriptome	115	N
F087443	Metagenome / Metatranscriptome	110	Y
F087444	Metagenome / Metatranscriptome	110	Y
F090626	Metagenome / Metatranscriptome	108	Y
F092367	Metagenome / Metatranscriptome	107	Y
F094113	Metagenome / Metatranscriptome	106	N
F097669	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0099839_100307	All Organisms → Viruses → Predicted Viral	2125	Open in IMG/M
Ga0099839_100570	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	855	Open in IMG/M
Ga0099839_100707	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	2545	Open in IMG/M
Ga0099839_100990	Not Available	880	Open in IMG/M
Ga0099839_101135	All Organisms → Viruses → Predicted Viral	2861	Open in IMG/M
Ga0099839_109760	All Organisms → Viruses → Predicted Viral	1276	Open in IMG/M
Ga0099839_111026	Not Available	656	Open in IMG/M
Ga0099839_111276	Not Available	965	Open in IMG/M
Ga0099839_112020	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	2908	Open in IMG/M
Ga0099839_112229	All Organisms → Viruses → Predicted Viral	1050	Open in IMG/M
Ga0099839_112376	Not Available	549	Open in IMG/M
Ga0099839_112980	Not Available	1037	Open in IMG/M
Ga0099839_115686	Not Available	827	Open in IMG/M
Ga0099839_116003	Not Available	654	Open in IMG/M
Ga0099839_118099	Not Available	779	Open in IMG/M
Ga0099839_119713	Not Available	575	Open in IMG/M
Ga0099839_120121	Not Available	946	Open in IMG/M
Ga0099839_129176	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	1638	Open in IMG/M
Ga0099839_130195	Not Available	666	Open in IMG/M
Ga0099839_146257	Not Available	527	Open in IMG/M
Ga0099839_148072	Not Available	618	Open in IMG/M
Ga0099839_149076	Not Available	682	Open in IMG/M
Ga0099839_154195	Not Available	937	Open in IMG/M
Ga0099839_154287	All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	787	Open in IMG/M
Ga0099839_154825	Not Available	529	Open in IMG/M
Ga0099839_156946	Not Available	580	Open in IMG/M
Ga0099839_156960	Not Available	664	Open in IMG/M
Ga0099839_158031	All Organisms → Viruses → Predicted Viral	3210	Open in IMG/M
Ga0099839_158148	Not Available	558	Open in IMG/M
Ga0099839_158175	All Organisms → Viruses → Predicted Viral	3158	Open in IMG/M
Ga0099839_158177	All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	1299	Open in IMG/M
Ga0099839_159457	Not Available	1085	Open in IMG/M
Ga0099839_159630	Not Available	773	Open in IMG/M
Ga0099839_160059	Not Available	652	Open in IMG/M
Ga0099839_160285	Not Available	1021	Open in IMG/M
Ga0099839_160379	Not Available	723	Open in IMG/M
Ga0099839_160634	Not Available	1666	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099839_100307	Ga0099839_1003071	F011233	LDYNWRVLAVAVPWFLPFVKGWRYHVPKLQRELLSGLPVPFTSEYTIINGQFPGYFVSAAVGTTDPNFITRASADGLTVIEVTVGELRDARVYRNQMGEPNILSYGSYIRGFPLPVYALSLSGDGLPFYQSIKIEVVPRNQPALITGFAANIIEIYDVNLFKESVKEFFESITPSPSTVPTSPGFVAEEVVSAKLPVRVT*
Ga0099839_100570	Ga0099839_1005701	F040183	TPNTTIVASGANTGPLTANTVCDFVQTPNHKELAVNLTIQAVSGTFSTGQGLTAYFDVLDPVEPQNINVNSSERPPVLELKLNSTAITTAPTTIRLVIANGVATVWINGASTVLGNVNVPYIWQVRFAISGTTPSFSIVGTYEARE*
Ga0099839_100707	Ga0099839_1007074	F026924	LSVSKVCWRQHYKFEASKIVHLGRHGFHIPVIVYGHDPDPEKAQEDLCINMVGFYEPIGSFRENQLILPPKKGERV*
Ga0099839_100990	Ga0099839_1009901	F008949	MSSQTVQLGTQTITPKVQDMGNSYYIEFQVKITKYLNNPVNQTIDIRFTCNKYKQVVVPSNPLSSPTVQTVQKTIQECVDEWFDQHKSVYEV
Ga0099839_100990	Ga0099839_1009902	F011097	VIKVIRDIPLATSGGTDPFTGLPVGGSPITGNGSNSQLLRFHPSYARLIIVVAGLSGTSPSIQFTIGSPIGSNFYTLPPITSPIYVYIIGNENRTIITYLNTNWQVLQQVELPYNIFLNGASVSWSVAGTSPSITAYIHFEFEDEEEGE*
Ga0099839_101135	Ga0099839_1011351	F027904	LQGDIWWLKMEKYEPPEYDLFNLNNGSTLVSTTPASLLYEGQANAAVIVPPDLTLRVKQVIIQNATTSLITVQLLAVTTVSGAPTPVAKTPPIPVPASSAVTLDEDEWSISVKSGYSLVAVSSAANSANVFVKAYFVKGTGSPI*
Ga0099839_101135	Ga0099839_1011354	F006070	MTLYPYLVVDLPITDTNTHTYRTNPFNPLTPTQPGISLVRLGESVPPVRAFNIYVYNFANADLNVQVIANENAKNYQYGALLDGLDYQSESSYPDFNVGSPVTVASGSLQPGVQTIQADFYSTSAERYISLALTYSTAPTTGFVRAHIVLFYEGF*
Ga0099839_109760	Ga0099839_1097602	F073767	MVSKTTENILAVVGVLGALGIGGYAVYKLVTSITSPITNPASAGCTTPGTPCYSAIQPELNALQGCTNEYMSLLNTYLEEDNKAGTSLTQAQQANLNYIMNSCIIPLQRQLSKNLQPYNWQANMVTVAKYVVITAGVLIFVRISPSVIRGIVNSLRTSSVM
Ga0099839_111026	Ga0099839_1110261	F094113	DKNVLAILESLYELYTRCLISRNYSDVVEKSIEEMKNENKISIQNLLLCFVRKVNTFTFPAMREWKKESEFLLIRDEFLPANYDYNNWQKHIEFEEYIEYKLLSTPASKIISPPETKTVMLIQEDKEFIMKLKKEFNYNTIDDAILHVLKNSTGWKMISLITRLLNEDITLKEIDENLGVFGDFIFIFAEQKNDEDEIKIVAQFYPLVHVIDFGKIIE
Ga0099839_111276	Ga0099839_1112761	F006070	MTLYRYLVVDLPIRDTNTHTYRTDPFDPLIPTQPGISLVRLGESVPPVRAFNIYVYNFANAALNVQVIANENAKNYEYGNLLDGLNYFTEESYPDFDVGSAVAVPAGSLSTPSVEPIQSDFYKDAAERYISVALTYSATPTSGFVRAHIDL
Ga0099839_111276	Ga0099839_1112762	F011233	LSGIPVSFSGNFTVLNGEFPGYFVSAAVGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVKEFFESITPSTVPPVVPTPPRFVANEVVSTRLPVKVT*
Ga0099839_112020	Ga0099839_1120201	F040183	VKLKYPFPQRFHYLTVLGKYLTPNTTIVASGANTGPLTANTVCDFVQTPNHKELAVNLTIQAVSGTFSTGQGLTAYFDVLDPVEPQNVNVNSSERPPVLELKLNSTAITIAPTTIRLIIVNGVATVWINNASTVLGNVNVPYIWQVRFAITGTSPSFSIVGTYEARE*
Ga0099839_112229	Ga0099839_1122291	F027904	VECKYDPPTYDLFNLNNGSTLVGQSPVTLLYEGQPNAAVYAPPDLTLRAKQIIIQNATTSPITVQLLAVAAPNTSLPGPIPKTPPIPVNAGSAVTLSEEEWGIAVRSGYGLAAVSSAANSANVFVKC
Ga0099839_112229	Ga0099839_1122292	F067921	SYSSSQHPDESSYTGFRVTKHNFTTLYYNFATEVSNFLPMAPFGGQASSTTSPPYITNFKFSLQLVQNVTDMFDLSRNYDAYQVFYGIAPSYLRTMLQIQQQFIAVLEQNINPSQSFVEMGIDGFQSPLFAPDPRTEFIVFSNLTYNMTLMNTATIPIMPAFNFVINRMTLEPLSKQEIKKAILAGFPVRTLGAVDSAIPVSRDNYPGLQTVTYKEVYGGGS*
Ga0099839_112376	Ga0099839_1123762	F097669	VPGGETPLFFWGQGEAPNYTYRCTACTYTNEYKETTIRHYYANHVSDNIKNQVFTVQKVALKDYGITVTLVVCSICKWSTDGRNSASVASHFYHSHVNPAVRNVTNPLVKQILERLKTLSEEELKQVLDYVNAF
Ga0099839_112980	Ga0099839_1129801	F027904	MEKYEPPEYDLFNLNNGSTLVGTSPVTLLYEGQPNAAVIVPPDLTLRVKQVIIQNTTSSVITVQLQAVTTQTGLPSPVNKTPPIPVPASSAVTLDEDEWSINVKTGYSLAAVSSAANSANVFVKAYFVKGTGSPI*
Ga0099839_115686	Ga0099839_1156862	F022017	MIANENAKNYEYGNLLDGLNYFTEESYPDFNIGSAVAVPAGSLSAPSVEAIQSDFYKDAAERYISVALTYSTAPTSGFVRAHIDLFYQGF*
Ga0099839_116003	Ga0099839_1160031	F006070	MTLYRYLVVDLPIRDTNTHTYRTDPFDPLIPTQPGISLVRLGESVPPVRAFNIYVYNFANAALNVQVIANENAKNYEYGNLLDGLNYFTEESYPDFNVGSAVAVPAGSLSTPSVEPIQSDFYKDAAERYISVALTYSATPTSGFVRAHID
Ga0099839_118099	Ga0099839_1180992	F094113	ESLYELYTRCHISRNYSDVVEKSIDEMKNENEISIQNLLLCFVRKANTFTFPAMQEWKKESEFLLIRDEFLPANYDYNNWQKHIEFEEYIEYKLLSTPASKIISPPETKTVMLKQEDKEFIMKLKKEFNYETIDDAILHVLKNSTGWKLISLITRLLNEDITLKEIDENFGVFGDFIFIFAEQKNDEDEIKIVAQFYPLVHVIDFGKIIEVSKK*
Ga0099839_119713	Ga0099839_1197131	F027904	VEQKYEPPDYDLFNLNNGSTTIGTSPVTLLYEGQPNAAVYAPPDLTLRVKQVIIQNTTSSPITVQLLAVAAPNTTLPSPIPKTPPIPVNANSAVTLSEDEWSISIRAGYALAAVSSAASSANVFAKCYFTKGTGSPA*
Ga0099839_120121	Ga0099839_1201212	F011233	VSFSGNFTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVKEFFESITPSTVPPVVPTPPRFV
Ga0099839_129176	Ga0099839_1291762	F040183	VKLKYPFPQRFHYLTVLGKYLTPNTTIVASGANTGPLTANTVCDFVQTPNHKELAVNLTIQAVSGTFSTGQGLTAYFDVLDPVEPQNVNVNSSERPPVLELKLNSTAITTAPTTIRLIIANGVATVWVNGASTALGNVNVPYIWQVRFAITGTSPSFSIVGTYEARE*
Ga0099839_130195	Ga0099839_1301951	F090626	MSRIVKFENIYFGKNSLVKLFANKTHLENSTDYDGTALAFLLDISDFTNTDTLLSHFAIINGNEIRPILVEWNLRTIHGRLLLLLNLLPGPHDTKMLLKRFESTIENQRPETIKYIAGQYAKALTNAKGLKQIYNFLVQRIQQLKSIGIKKSEEEVRRLAEIYR*
Ga0099839_146257	Ga0099839_1462572	F026924	MSVVKICWRMHYKFEASKIVHLGWHGFHVPVIVYGHDPDPGKAQGDLCINECGVYEPIGSFRENELILPPKK
Ga0099839_148072	Ga0099839_1480722	F087444	MSEKTLNIPQIDPVFSYHVESGVIYVYLVKAGFATFTFITFDDGYSEYAYAIETLVPRPALVTKPVVSPVKAVYDMLEQAEKEFYDPFISNPFSKLLKEDHEARTKLIITVRKILESGE*
Ga0099839_149076	Ga0099839_1490762	F023140	MEEFTVRKTNIRRILLSNVFIGLVTVPVYIVLKSFPFLAVFGVGVLTTLTVLILFFYFLGAKFVGTWAVLQKFAVTLPTSLVLTRLVEDVPRNPYLDYVVLFLVGYTVSTPLIFLTYHVTRWLYVKKGRLNTPNLRER*
Ga0099839_154195	Ga0099839_1541953	F050482	MEEELEKMGFKTIDVKNRFPSHTYHIYAVLKNGYALSICQGIGVHGSFVRAPYSNQQTFEVALGRYVGGVFYLIYEGKWKDDVLGWQTPENVIELAKSVKRRRS*
Ga0099839_154287	Ga0099839_1542872	F021808	LVIYIKIMMNEEPPYGTMAWYFYEIDERQRQIYELVFDIDQKLAKVKDLLNEIDLLKAQLETNVNVGKI*
Ga0099839_154825	Ga0099839_1548252	F097669	SPDEPPVPGGETPLFFLGVLRSLPKIWVEAQGEAPNEKYKCLQCSYVSDYKEQSIRHYYGTHIPDELKDKTFTVEKVNLKDYGITVSLVICNICKWRTDSRNGPSVASHFYHGHVNPAVRNITNPLVRQILERLKILSEDELKQVLDYVNSLA*
Ga0099839_156946	Ga0099839_1569461	F021133	MEPDDKMANFSATDCIIGTANTHLALKIAKEKGYPQDVIEYLENQSKQEQWHCQLQIGKPPKPYDFVVAQKHREILLKHGIYVWMGVMPLLGEKIALAKAICWRRNDDPHFVNKFATVDEYYHTTYPLLLLSKYASEEELEKIIELQKEYITNIFKLK*
Ga0099839_156960	Ga0099839_1569602	F062912	LAETYNLFLVSDIIENESEIDKELVNLLANRDYNNMAKTLIYTLIYTINEDPAYRNIRQIYINEAIDLLYIIDRIGFDNERIMKKFVNLLYQFYSYSLQYKINFIADKEKKRIC*
Ga0099839_158031	Ga0099839_1580315	F033508	LFVTNPPSYGYADIAVGTRVFIRLPFQAANCVTVSNPGQKHAGKGFLWGLSDLFGAENLPNAAEDEDINITLNAAATRIDAYYAEIQPQDVSSHSVNGGSDAKVKPFIEILDTLVNSAGTSINVLNENMPTGLGLLDISGRVKATTQFTLLTMFADYVSSGTNFTEYSRLHIFDEDEELFTPLNHEGLFIDYTVTQGDLYMNFPARLYFKPDQPYIFKPNHQISVKADVAAVTGTGSTLRVALIGIRERLG*
Ga0099839_158148	Ga0099839_1581481	F075083	MDLAEIDLTEMSETESQKQKLIEYLRELDIDFEIGKDSVRIKGLAGSVCCGHIVVYQIPDKEIVYEELGDANRIILNSTDESRPGIKQILLDKSVYAR
Ga0099839_158175	Ga0099839_1581754	F022017	VQVIANENAKNYQYGSLLDGLDYQSESSYPDFNVGSAVAVPAGSLSAPSVYAIQSDFYMNAAERYLSVALTYSTAPTTGFVRARINLFYQGF*
Ga0099839_158177	Ga0099839_1581774	F087443	WMNFLDSDNVDYIDKEITKTAVDLDLDPSEIRAWIFKAFIYDMEVKAKVIEYIKKNESTSN*
Ga0099839_159457	Ga0099839_1594573	F092367	MSENKVSINITQRFEKIDATVAKILRMLNHDLELGLEDDVVVALKLLLYLLHILEQKAVTKEEKETVRQVKAQIVEYVTGE*
Ga0099839_159630	Ga0099839_1596302	F080244	GIPVKVMDLVAELFLGAFLVLMSVFLVTDDGLLQNERVIQLFVTLNLSILSILSSIYSRSYPKENKPDEFVKDIVALLFIGFATTILLLGSLLNTQLIQNEYIWGQLFSDVTALIYVSTGITSTDYSQGDTVSKSSGN*
Ga0099839_160059	Ga0099839_1600591	F075083	DLAEIDLTEMPETESQKQIQKQKLIDSLRELDIDFEKGEDSVRIKGLAGFVCCGNIVVYQIPDRKIVFEELGDANRIILNSTDEIKPGIKQILLDKSVYARYDFPYLIIQF*
Ga0099839_160285	Ga0099839_1602852	F071411	MSEDDKMLYRMKNMADIRTELEKHIDNIAEQLIAQQLEDNLQDVIDDAIDAQLYIDLSTKEPVGFDIGIAIGGPNIRLIYSRGACQLRGWWGSLNDIKDIDNEICETILDYLTEIYRQ*
Ga0099839_160379	Ga0099839_1603791	F066922	ENVPLNEELERLKTIVSEKIQKFASDRTIRRYVARLEKLELSKVSAEQAIRVVAIFLSTPLGQWLLTVIILELLAKAKFFSEIEVDILIGAVTSMELITALAKSGIITQIAGLAGLF*
Ga0099839_160634	Ga0099839_1606344	F094113	PILSTRIKHEIKDKNALSILESLYQLYTRCHISRNYSDVVEKSIEEMKNENKISIQNLLICYVRKVNTFTFPAIREWKKKNEFLLIHDEFLPADYEYNNWEKHIEFEEYIEYKLISTPTRKIISPPETKTVMLTQEEKEFIMKLKKEFNYDTIDDAILHILKNSTGWKMISLITRLLSENITLKEIDEILGGLGDFIFIFAEQKNDEDEIKIIAEFYPFVHTIDFGKIMEVSKK*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007161: Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=8 metaT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences