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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300007185 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0103597 | Gp0123889 | Ga0099773 |
| Sample Name | Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_T0_4L (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 65299778 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 9 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 7 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Austria: Klosterneuburg | |||||||
| Coordinates | Lat. (o) | 48.3 | Long. (o) | 16.2 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019117 | Metagenome / Metatranscriptome | 231 | Y |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F051952 | Metatranscriptome | 143 | N |
| F052619 | Metagenome / Metatranscriptome | 142 | Y |
| F056350 | Metagenome / Metatranscriptome | 137 | Y |
| F070166 | Metatranscriptome | 123 | N |
| F105419 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0099773_1004912 | Not Available | 1019 | Open in IMG/M |
| Ga0099773_1028703 | Not Available | 911 | Open in IMG/M |
| Ga0099773_1133070 | Not Available | 591 | Open in IMG/M |
| Ga0099773_1139051 | Not Available | 517 | Open in IMG/M |
| Ga0099773_1141696 | Not Available | 763 | Open in IMG/M |
| Ga0099773_1161753 | Not Available | 523 | Open in IMG/M |
| Ga0099773_1176648 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 824 | Open in IMG/M |
| Ga0099773_1183372 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium | 834 | Open in IMG/M |
| Ga0099773_1188032 | Not Available | 752 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0099773_1004912 | Ga0099773_10049121 | F070166 | QRFLVSKIAYGKDFSLIELAALFHNQLWLQVKCETDIHFKEKFGGTLEVLAKILKECNFSRGLQPGTISRMKTKVLALEGDFLIPQRNLPNLEAQLRNSITTKWRKQEGIEINKLPPKSFIGKGYRDHGTAPSPEIDGTPSWQEVGSEFSNLEREHTEAFLFLLKVIDNDPNVSIQERLQGLKRAIEVAERIKRIHPNWRNSQITEASKGRIIDAKKVKKVIP* |
| Ga0099773_1028703 | Ga0099773_10287032 | F051952 | MPKFPRQTIAPDHFTTTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRAVFTSLEDVVSANPQDRLNRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLKVLTRFPKKFKPKAFVGKGYGDHGTAKDMAYDGSPSWQEVAMADTNLGTSDTSKTDYLEFLFRNFNTNRVQLFPQKKPGEKLHSSSN* |
| Ga0099773_1133070 | Ga0099773_11330701 | F019117 | MSVLAKVVLVLAIVAAVSAQKNKPKFSDSFTSNVEFVEVFNGQNFSIYGSWYVDFVGRQHAFHANDQTFGPMQIYRYYNLSKQYEFYVNSGFCNEQMGMRLPFFGTFDFLAKASNTGNCADRHGNNGLMWTATINSQPGFGFELNLCASATANIPYFIDMRGQWNYQDFERQV* |
| Ga0099773_1139051 | Ga0099773_11390511 | F052619 | VENLYDINCDGINPSLVASFFSLSQLPASSDFTNLFDMYRITKIEIEWLPEYTELTDAALVSNAVNVRFNSTIDLTDSLAPAAVSDLLQYQQVLTTGITKPHKRTFVSCFLMGGLVPCQCWLPTSSPAERHYGIKTGIDPTGVAMRFRSRVKMWVECANVN* |
| Ga0099773_1141696 | Ga0099773_11416961 | F025291 | KQPNQRRKQVTNGKNKHHMVNLQREINIFRESAWRVITYNYHLGDHSSTGLYTLNVGADQRYMSFQTLLSTDEFQNMSVVYNEYKIHKAVFTSLPTTNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKATTAQSCEWNLKGLGPNFGIWLDTGATIPGQFQIGNYIFGSIPMNLGWEVKFQLVVEFTNPK* |
| Ga0099773_1161753 | Ga0099773_11617531 | F025291 | RKQNTGNGKNKHHMVNLYKEINIFRDRAWRVITYNYHLGDHSSTELYTLNVGADQRYMTFQTVLTTDEFQNMAIVYNEFKIHKAVFTSLPTTNSNRLPYLYVDIEPTTSAGVNPNNVRVCADDSARIFAPKALSAQSCEWNLKGIGTHFNVWIDTGSVSGLPGQFQIGNYIFGS |
| Ga0099773_1176648 | Ga0099773_11766481 | F056350 | NFNLKNLLSYFAVLTVSFHEIQSLWGFFALIIVFSQIVSGIMLSFSLIPDSMLIPMARDEEDCEDLVTDDFFWVHERGVDLVFIFTYLHLFRKFYLNLIEYEHEVT* |
| Ga0099773_1183372 | Ga0099773_11833722 | F105419 | MRKLFALGALMVAAAVSNGCISNTMYGCEITETLAPGASEGEVVMKHGAPDNIVYLGNQYCNPQTGERGEVDKYLYEYRIGGGTTLLGWLFASDEFHNIAYLIEGGRVMGGGYVGEGKGSIILGNNFGVVSTPLGVFDMNFGGFVHPKARAGYGGDGTPERQY* |
| Ga0099773_1188032 | Ga0099773_11880321 | F025291 | KHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFQNMSVVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKHLNAQSCEWNLQGMGPNFNVWLDTGATIPGQFQIGNYIFGSIPMNLGWEVKFQLVVEFTNPK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |