Basic Information | |
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IMG/M Taxon OID | 3300007186 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052640 | Ga0103259 |
Sample Name | Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 246515023 |
Sequencing Status | Permanent Draft |
Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 131731885 |
Sequencing Scaffolds | 21 |
Novel Protein Genes | 22 |
Associated Families | 22 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 4 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 | 2 |
All Organisms → cellular organisms → Bacteria | 2 |
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus | 2 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 2 |
All Organisms → Viruses → Predicted Viral | 2 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → unclassified Alloprevotella → Alloprevotella sp. OH1205_COT-284 | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus haemolyticus | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella | 1 |
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 2 |
Ecosystem Assignment (GOLD) | |
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Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
Location Information | ||||||||
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Location | USA: Maryland: Natonal Institute of Health | |||||||
Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F032313 | Metagenome | 180 | N |
F033081 | Metagenome | 178 | Y |
F046432 | Metagenome | 151 | Y |
F046433 | Metagenome | 151 | N |
F051210 | Metagenome / Metatranscriptome | 144 | Y |
F068942 | Metagenome | 124 | N |
F072446 | Metagenome | 121 | N |
F073671 | Metagenome | 120 | N |
F078842 | Metagenome | 116 | N |
F080166 | Metagenome | 115 | N |
F081455 | Metagenome | 114 | N |
F081456 | Metagenome | 114 | N |
F085820 | Metagenome | 111 | N |
F094007 | Metagenome | 106 | N |
F095629 | Metagenome | 105 | N |
F095631 | Metagenome | 105 | N |
F095633 | Metagenome | 105 | N |
F099453 | Metagenome | 103 | N |
F103432 | Metagenome | 101 | N |
F103433 | Metagenome | 101 | N |
F105378 | Metagenome | 100 | N |
F105379 | Metagenome | 100 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0103259_100001 | Not Available | 326144 | Open in IMG/M |
Ga0103259_101111 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 | 17279 | Open in IMG/M |
Ga0103259_101226 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 | 16088 | Open in IMG/M |
Ga0103259_101408 | All Organisms → cellular organisms → Bacteria | 14761 | Open in IMG/M |
Ga0103259_101608 | Not Available | 13326 | Open in IMG/M |
Ga0103259_102103 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus | 10821 | Open in IMG/M |
Ga0103259_102308 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 9975 | Open in IMG/M |
Ga0103259_105566 | All Organisms → Viruses → Predicted Viral | 4402 | Open in IMG/M |
Ga0103259_106037 | All Organisms → cellular organisms → Bacteria | 4015 | Open in IMG/M |
Ga0103259_106518 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 3693 | Open in IMG/M |
Ga0103259_106672 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus | 3604 | Open in IMG/M |
Ga0103259_107577 | All Organisms → Viruses → Predicted Viral | 3113 | Open in IMG/M |
Ga0103259_108848 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → unclassified Alloprevotella → Alloprevotella sp. OH1205_COT-284 | 2643 | Open in IMG/M |
Ga0103259_109135 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus haemolyticus | 2551 | Open in IMG/M |
Ga0103259_109961 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella | 2314 | Open in IMG/M |
Ga0103259_111111 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium | 2059 | Open in IMG/M |
Ga0103259_118297 | Not Available | 1169 | Open in IMG/M |
Ga0103259_121489 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 972 | Open in IMG/M |
Ga0103259_121919 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 951 | Open in IMG/M |
Ga0103259_123021 | Not Available | 902 | Open in IMG/M |
Ga0103259_137552 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 507 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0103259_100001 | Ga0103259_100001316 | F051210 | MNNYSQIMGNSAMMDALRASSVSAEDARLRGNEYAKMFSRNEEMMNVFGLGGNNANLLQKTFSGYSETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDLRQVLPNLGPDQYQDVQVMGAFELPVTINTGTAAYSPLVGRKLIPGTVRVKVEDGTGKKFELIDNGQGSFMAVAGVLKTGTVNYLNGKIDFELTTAISNPAGKITIVGKEDTTGTPSCTNGASNAHANDKRFIAKMQQVALNTVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKTINYRLISTLEKGYTGDVMNDLDLSNASTSLASKFQDYRSRVDLFDAYLINVETSLATRAVKGVTTTAYVAGNQAANQFQKGGVIGKFERNTKMTYISDLLGWYDGVPVLRSTDIHEEQGEGTFYAIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF* |
Ga0103259_101111 | Ga0103259_10111115 | F081455 | METIAKTKNIGFINNLINTCDGYIKINHKEKLRERFPRNTIIEEKDIPPVEEIGAEKVDIIDVAEEAIQQPLQNKDSSIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAIRLLNYKMSDQNAAAAFAQFVSEFNPECDPNKRLRYELIRHQGREKYLVIRLSTVVNGTTKYYADIYPDLNKIDLDHHLISSAKK* |
Ga0103259_101111 | Ga0103259_10111116 | F080166 | VNILANFENYNKVVEQIFELNYYLTFKLEVTFNTIHKKINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTIIEESINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAITPLLGTNRQNMLR* |
Ga0103259_101226 | Ga0103259_10122610 | F095631 | MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYMGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELILNTVSDTFKFDRNIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYTTYHKTIITTNPLESKMLQFEFDNQLAGFDVDIKEYDQPTRKLKPVYNGLNTDGINNFCNYTYIDSSTIRVMFDNSSYLPTANTEVTVNLYTCQGSNGNISYKDSIYFRVKSEKINYDRLNLLVIPTSDAQYGIDKRSIADLKKLIPKEALSRGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASVAYQSSEEELNNARKNQFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFVANKMNWYRHYLSERDTYVGDISIMQNIQSDIGLVHRDDPYDPEKITGVDVKVLAVFYTDEKYQVPYRWTEAEFVNYDQNTFIMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMNMKIFVFAKDVFGYNAGLHKADQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKIRKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILECLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLTEYIKNDIRKYIEDKSRISDIHIPNIITFITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA* |
Ga0103259_101408 | Ga0103259_10140813 | F103433 | MIFVMKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWSGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAVDSKEMMSQDCNPSQVEPYVSQYGLQARVIAGLSPNDTSKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLSFSPWTAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESIAIFLKLLNGYEYVSTIAISVLVPIVFFELVHKNVKIINLWKQAVPVFTATVVAFFGAYWVNFVSLTDYYGSSDKAASAINAKASYRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGYALPHAHINGIIFYIPLLLFVYVLIGLWADCVVKRPVKYE* |
Ga0103259_101608 | Ga0103259_1016085 | F105378 | MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSIHQFVTDEEKNKWNNKLNVPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTTDAISIYNTGSFTGSFQCLIVYPLGSVNE* |
Ga0103259_102103 | Ga0103259_10210311 | F095633 | MRNYENSTEVGCREGLTEGELRTMGTLAMEATEELKKTTISKEAVLLGGVPFNSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDRGEMSVEENSVPEEVFIDLSRTRCVVDMDRSHKSYKFTCPVLKKYPSGELYPIREAYVISAIDVNGSQEVDFKVI* |
Ga0103259_102308 | Ga0103259_1023084 | F105379 | MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGVGPEKSYFQTTSYMVDLSLHINNLLVNISDLKNLGKITQLEPSIENPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINIGGYMIDIPKSAIPTLKSDHVVATVYNAPNKNFNILRFKITKRNGIIVNQSMLFLPY* |
Ga0103259_105566 | Ga0103259_1055663 | F099453 | MNRFDVIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYREEVELKCVKQSCQWILDNIQYIRSLGLVVIPEVYQARLANLTDIIYTPKYPMAIAMAKLEYMLGKKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA* |
Ga0103259_106037 | Ga0103259_1060375 | F033081 | MLPPYFMVVHRPQKGAMAWLLRRAMPRDTRPIFVWPKLVVAIEGYFHRRWLVAIAVLLIAVTIVIAKALLLVPGLDNSVVGLLTSIFETFLPARWATGAAWVAGMTGVFLIGDFTDYTPSQKSLHSLRATKWGVYNALLLFALWEEQAFRSGSEKWSWRERVRASVCFGAIHVVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRNQIVATAAAATVHTLYNVIALSLIVVAAAIILVIDIAKMM* |
Ga0103259_106518 | Ga0103259_1065182 | F032313 | MYRFLILLYALTLMACDNDTPQEKPREQEKHEVPVPKSKPQFDEVGERIWYEQTPTMRLDSTDYGAGLTPVFGMRTSSISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGILGWVTTTEFTCRNGVILLHKQGIRVNHVDTVNYVYDEVGNEIVLEGTGIRWSVLRLNKNAVEFLQRGHTMWGPFDWYYGRNSGRSEVMLEAK* |
Ga0103259_106672 | Ga0103259_1066725 | F046433 | MIELPTSPDALSELSPVALPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMKSRCEMTEYEAINDFVQFIEMTKHYLPDYMEYCAKELIDELVFLGMSELHFAATALAKRLRHHLEVDNNPVYIDVVNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKVLFLDDWIISGDQVKKRIAGFGVDNDPESHEASVLVMAASSNYIDNGIGADSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSAFGCEVDDIAYRAIDGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG* |
Ga0103259_107577 | Ga0103259_1075773 | F095629 | MTFKERMMRELIICLCLLGCFSVANANNVEQPKEVKIVHNDDSVALHKKIYQLEKRIERLEELLKKEDK* |
Ga0103259_108848 | Ga0103259_1088485 | F068942 | MIRKILSLPTLALCFTLGSAFFAGCNENYIENTETKVRWSNVKNPKYGDYINITLKAEGETFTTVGDHSRISFSGSVSTLDTFTRHDIPKVDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKQFDFSIEVTPPSLYIFKVRQPALPAKAQ* |
Ga0103259_109135 | Ga0103259_1091355 | F073671 | MESLLRLRMTNNKQAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKEQK* |
Ga0103259_109961 | Ga0103259_1099612 | F072446 | MKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDRTEKEYNDMELGKEAHLVFRATVHGDTINRHKKELKALSLQLNRLTETSIGTSPVLCGVKSIEAVGVAERGNTYDLRGEMKLRIRDYSYRLKYPSGIITLDCENTESLTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSVLQELPSKSVQQYYTPNGYEREATYFTALWPVHDKYNEKEW* |
Ga0103259_111111 | Ga0103259_1111113 | F046432 | MQMSESRLSDVISKYQMPEGRYSVEGEGSFGESEFFWVIKNQSTNQKYLLVNTYSHHGVEAELECYREGGFENLEAIPRRIETLEIASYADDEISKYLFGMFSLFEIKS* |
Ga0103259_118297 | Ga0103259_1182972 | F085820 | MYEKTTFLLLLSENDYLCMVLIRNCSNFIRALMRSTFYLFAMLFLATTFFSCETGEPAPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTRADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDGLKQRIVLRLADGTEIEKELSDKGK |
Ga0103259_121489 | Ga0103259_1214892 | F094007 | MKSKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAMNACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRPGWNKGCIDNNA* |
Ga0103259_121919 | Ga0103259_1219192 | F078842 | YGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLQRAFVRCSDNHKQVILNRSTLNAVLGGCIIGGKGWLEMADSAQIRRMINSIELDIYEVNS* |
Ga0103259_123021 | Ga0103259_1230212 | F103432 | IHSLFSLSLLLVLGGLLCIPACQDDAEPTQRTGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHSLPSVSAYSLQVVAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVAGIDRKGKPRDLGNYSCPLLQGKRRNVNFRTKEGVFHEYFEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLR* |
Ga0103259_137552 | Ga0103259_1375522 | F081456 | SLIFLIVFGAISFATWLVWLTNAAFFVKLVITAIGILFAAFTVILYTISAE* |
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