NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007188

3300007188: Ant gut microbial communities from Cephalotes rohweri, Arizona, USA



Overview

Basic Information
IMG/M Taxon OID3300007188 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117930 | Gp0126573 | Ga0103264
Sample NameAnt gut microbial communities from Cephalotes rohweri, Arizona, USA
Sequencing StatusPermanent Draft
Sequencing CenterHarvard University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size56195660
Sequencing Scaffolds0
Novel Protein Genes16
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationTuscon, Arizona, USA
CoordinatesLat. (o)39.0042816Long. (o)-110.9Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054614Metagenome / Metatranscriptome139Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103264_1002382Ga0103264_100238212F054614IMSLILTLTGKSNVLATTYFPAIDLNDDDYELGLMNFETYNTISNVNASNNKFYFDENDVEITIPEGSYELHAINEF*
Ga0103264_1011130Ga0103264_10111301F054614LTFTLTGKSSIHAISYYPAADLSDGDFELSLTDFETYYTIPNVNSSNNKFYFDKDDEEIVIPEGFYATHNIYKYLKRVILDVIMKKKDTSQKQR*
Ga0103264_1063859Ga0103264_10638591F054614MSLILTLIRKNNVLATTYFPAIDLNDDDYELGLMNFETYNTTSNVSVSNNKFYFDENDVEITIPERIVRIASHE*
Ga0103264_1068490Ga0103264_10684901F054614MSLTFTLTGKSNIFAVSYFSAVDLSDSNYGLDLTDFETYYTIPNVNSSNNKFYFDKDDKEIVILEVTLDHTNYMIQTSI*
Ga0103264_1070491Ga0103264_10704911F054614MSLIFILTGKSSILAVSYFLAVDLNDGDYKLGLTDFETYYTISNVDSSNNKLYFDKDDKEIVIPEGSHDIDKYLKHAISNNIMKKKTQR*
Ga0103264_1072439Ga0103264_10724392F054614MSLTFTLIGKSNILAVSYFPAVDLSDDYELGLTDFETYFTMPNINSSNNKFYFDKDDKEIVIPEESYELHDIDKYLKRAISNIVKKDVSQRR*
Ga0103264_1074361Ga0103264_10743613F054614MSLILTLTGKSNVLATTYFPAIDLSNNDYEFGLINFKTYNTIWNVNASNNKFYFDKNDAEITIPEGSYELQAI
Ga0103264_1075943Ga0103264_10759432F054614MSLILTLTGKSNVLATTYLSAIDLSDDDYELGLMNFEIYKTISNVNASRCVNNKFYFDENDVEITICEGSYELQAINEFL
Ga0103264_1083938Ga0103264_10839381F054614MSLILTLTGKNNVLTTAYFLAIDLNDDDYELGLMNSETYNTISNASNDKFYFDENDVEITIPEGSYELHAINEF
Ga0103264_1085334Ga0103264_10853343F054614MSLILTLTGKSNVLATTYFPAIDLNDDNYELGLMNFETYNTISNVNASNNKFYFDENDVEMTIPEGSYKLQAINEFLKHAIP
Ga0103264_1090451Ga0103264_10904511F054614MSLTFTLTGKSSILAVSYFPAVDLSDGDYELDLTDFETYYTIPNVNSSNNKLYFDKNDKKIVILEGSYELHDIDKYLKHNFK
Ga0103264_1091116Ga0103264_10911161F054614MSLTCTLTGKSSILAVSYFPAVDLSDGDYELNLTDFEIYYTIPNVNSSNNKFYFDKNNKKIVIPEGLYKLRDIDKYLKCTISNN
Ga0103264_1094740Ga0103264_10947402F054614MSLILTLTGESNVLATTYFPAIDLNDEDYELGLMNFETYNTISNVNASNNKFYFDENDVEITSPEGLHAINKFLKHAIPHSQHGS*
Ga0103264_1096132Ga0103264_10961322F054614MQSLTFTLTGKSSILAITYFPVVDLSDGDYELDLTDFETYYTISNVNSSNNKFYFDKDDKEIVISEGSIRTT*
Ga0103264_1098456Ga0103264_10984561F054614MSLILTLTGKSNVLATTYFPAIDLNDNDYELGLMNFETYNTISNVNASNNKFYFDENDREITI
Ga0103264_1105381Ga0103264_11053812F054614RTVFQSCLILTLTGKSNVLATTYFPAIDLSDDDYELRLMNFETYNTILNVNASNNKFYFNENDMEITIPEESYKLQAIMNF*
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