NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007190

3300007190: Ant gut microbial communities from Cephalotes umbraculatus, Peru



Overview

Basic Information
IMG/M Taxon OID3300007190 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117930 | Gp0126577 | Ga0103267
Sample NameAnt gut microbial communities from Cephalotes umbraculatus, Peru
Sequencing StatusPermanent Draft
Sequencing CenterHarvard University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size255805434
Sequencing Scaffolds0
Novel Protein Genes5
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCephalotes Ants Gut Microbiomes
TypeHost-Associated
TaxonomyHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Ant Gut → Cephalotes Ants Gut Microbiomes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationCICRA, Madre de Dios, Peru
CoordinatesLat. (o)-12.5Long. (o)-70.1Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006510Metagenome371Y
F054614Metagenome / Metatranscriptome139Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103267_1006178Ga0103267_10061784F006510VTKELNNISKTIFLEGMKKLKECANKCINQGEMYFEK*
Ga0103267_1030346Ga0103267_10303464F054614MSLILTLIEKSVLFTTYFPAIDLSVDDYELGLMNFETYNTIPNVNASNNKFYFDEDNVEIILEGSYELRTINKFLKHANP*
Ga0103267_1033862Ga0103267_10338623F054614MSLTFTLMGKSSILAVSYFPAVDLSDGNYVSSLTDFETYYTIPNINSSNNKFYFDKDDKKIGIPEGSYELHDIDKYLK*
Ga0103267_1050400Ga0103267_10504002F054614MSLIFTLTGKSSIFAVSYFPAVDLSDGDYELGLTDCETYYTIPNVNSLNNKFYFDKDDKEIVIPEEADPRTNYMI*
Ga0103267_1094609Ga0103267_10946092F054614MSLILTLTGKSNVLATTYFPAIDLSDDDYELGLMNFETYNTLSNVNASNNKFYFDENDMEITIPEGSYELHAINDFLKHAN*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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