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Sample 3300007259
3300007259: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 158337416 reassembly
Overview
Basic Information
IMG/M Taxon OID 3300007259 Open in IMG/M GOLD Reference Gs0063646 | Gp0052694 | Ga0104759 Sample Name Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 158337416 reassembly Sequencing Status Permanent Draft Sequencing Center Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis Published? N Use Policy Open
Dataset Contents
Total Genome Size 21757153 Sequencing Scaffolds 1 Novel Protein Genes 1 Associated Families 1
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal surface
Location Information
Location USA: Maryland: Natonal Institute of Health Coordinates Lat. (o ) 39.0042816 Long. (o ) -77.1012173 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F018385 Metagenome 235 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0104759_100021 All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes 43192 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0104759_100021 Ga0104759_10002126 F018385 MDTSGTETTMSEYVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK*
