NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300007271

3300007271: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ15 time point



Overview

Basic Information
IMG/M Taxon OID3300007271 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114916 | Gp0124990 | Ga0104347
Sample NameMarine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ15 time point
Sequencing StatusPermanent Draft
Sequencing CenterAustralian Centre for Ecogenomics
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size96820719
Sequencing Scaffolds10
Novel Protein Genes12
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86A1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameExploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPort Hacking, Australia
CoordinatesLat. (o)-34.1192Long. (o)151.2267Alt. (m)N/ADepth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000866Metagenome / Metatranscriptome855Y
F001611Metagenome / Metatranscriptome663N
F011904Metagenome / Metatranscriptome286Y
F030783Metagenome / Metatranscriptome184N
F081296Metagenome114Y
F082635Metagenome / Metatranscriptome113N
F084187Metagenome112Y
F085800Metagenome / Metatranscriptome111N
F102667Metagenome101Y
F105107Metagenome100N
F105224Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0104347_100997All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria29754Open in IMG/M
Ga0104347_102971Not Available4068Open in IMG/M
Ga0104347_105260Not Available3128Open in IMG/M
Ga0104347_105872All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium7833Open in IMG/M
Ga0104347_106032All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana2499Open in IMG/M
Ga0104347_107213All Organisms → cellular organisms → Bacteria3504Open in IMG/M
Ga0104347_108593Not Available3206Open in IMG/M
Ga0104347_109440All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86A4905Open in IMG/M
Ga0104347_118822Not Available2929Open in IMG/M
Ga0104347_119807All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2167Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0104347_100997Ga0104347_10099714F105107MLQIQNTAIESFEGLLSYFEMIMLLSVLITLSIFKQANNIAILQSFGQSPLKISMIAACAPLILSFLFIGFSLLIPSNDVDTYPQWELEDQSISVLQKDKVISIDFSSNKINKVLSTTPNDLSANTEPSSVLQKMSSRTLSLPFATLALVLLASIFLFKHQRNFSISQSIFFGIAAGFGYKLISDLFYLGFRSFDLNINLGIYIPPTIALCFSVFFFLRLSKP*
Ga0104347_101869Ga0104347_10186913F082635MKSIFNLVCLAIVILASHYASANQNEFKINAEIIDYDPSKKIISLDGAISMTSDDFQISGTTATISMNEEVISIEGNPARINLENPEKIFGEAKQIKYTPAKEISLVGEAVLRTKDGELXSHVMRKNFH*
Ga0104347_102971Ga0104347_1029713F081296MWQFLMGFSAGIYVGTVYDCKPTVEFISKCIKNNIPKDAIPKKKDEK*
Ga0104347_105260Ga0104347_1052601F011904MSFNPPEGILDIGNATLRVGKLEVAETTGLNQGLQNIVKNDLLITEKETYLANKTWGIKLPTAWVGEFDLKTHDNKYVEFNFYNEGSTSNALGYTLNFKDTTLTLKYDNGNSNLASETIPDVSTSTYKKVNVFFERGVIAVFIDGARVLYFKESDTYNSVHGHPGMASRVASTTGGSFVNIFIEEDGSDSAVKDLRIVNGRLISDKTSNVSFIGSLGVGVNNPKESLDIRGNMHFNRVSNVSSVSVDSNVVTEYTGPHDRPLRKYPEVVLTADDNLSTSGYKASASSQHNSDAFRAFDA
Ga0104347_105872Ga0104347_1058721F011904MSFDPPAGILDIGNATLRVGKLEVSETTGLNQGLQNIVKNDLLITENNESSPYTTSNAWGVKLPTAWVGEFEVKGQSGKYIEFNFYNEGSTSNALGYTLNFEDTSLTLKYDNGNTLATATIPTIVGTFRKVNIFFERGVIAVSIDGIRYLYHKETDGFNNGLGVASRVISATGGAFVNLFVEANSNESSQFKNLRIVNGRFISDKTSNVSFI
Ga0104347_106032Ga0104347_1060322F000866VLKSSPGAAIFGRDMMFNVPIIADWNKIGDFRQAQTRRNTARENAKRTDFDYQVAGRVLVRQDGILRKAETKWTGPYNITAVHTNGTIRIQRGALSERLNIRRVKPYFE*
Ga0104347_107213Ga0104347_1072132F084187MKTPESPKINAYIIFALVILDVFFLYNLIQYIRFGLDTHLYGFLISLGAGIIILIYLWKNDYFPKHDNN*
Ga0104347_108593Ga0104347_1085939F085800KRQEMIRLQHNKIFVQAVSEDLTETMLMRLKDEGVNLVDPIFLKDYKLLSEALKSLILRHLKMKHPLQERVDRSVTTKGEGKDLYAITIDYKKF*
Ga0104347_109440Ga0104347_1094406F030783MTTDHKNKTPFLLGLLFLALVTTHEIEHIAEAFEIEDEAFEINCDYCEESQSQDLVNSKTNITSIDFDIEDSKLVSLTDQSLSKNYHQRAPPKI*
Ga0104347_111135Ga0104347_1111354F105224MNAEEIIKLNKKALYESLSSSDKFGKFFNKSILHNAAIMEVFSCNRLG
Ga0104347_118822Ga0104347_1188222F102667MMLCELTNKEQITVLPTQKEMWMILQKLYTDNQKLKKRVQQLEQTANKDIKKMNMVDWLNKNDKGINIDIWLKNNVYVTLEDLEMIFKSDYTRGLSNILQNNIQNGENTPFRAFSHKSKQLYIYEKNKWKKCKKTDIMKIFDRISLNILKISKEYDKKLSKQEKYGADNLEYLKNCDKIMIVDTKKKERHYRYIETSIIALTCKSLNDMTEYKFYI*
Ga0104347_119807Ga0104347_1198074F001611MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVSGQPFGVLNGAYLNNDLLTTGSQRNRVLVRFTNDTANTRTIR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.