NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007288

3300007288: Human stool microbial communities from NIH, USA - visit 1, subject 159510762 reassembly



Overview

Basic Information
IMG/M Taxon OID3300007288 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052683 | Ga0104346
Sample NameHuman stool microbial communities from NIH, USA - visit 1, subject 159510762 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size63164153
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides1
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051936Metagenome143N
F074964Metagenome119N
F087335Metagenome110N
F090484Metagenome108N
F099406Metagenome103N
F099451Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0104346_100006All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron306767Open in IMG/M
Ga0104346_100237All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides46066Open in IMG/M
Ga0104346_100403Not Available29711Open in IMG/M
Ga0104346_100908All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales11439Open in IMG/M
Ga0104346_110308All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus633Open in IMG/M
Ga0104346_110814All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus607Open in IMG/M
Ga0104346_113372All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium511Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0104346_100006Ga0104346_100006143F051936MKQEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVIIIFFATLIIRYLSIHISIKK*
Ga0104346_100237Ga0104346_10023728F099451LCPGEYASGLLIKKIMAIDKIKTVGQLRKVIESLSDDYEIEMRIRRKLSDDEIRELHNKYGRIYPYPYETQYPELEFDDIGVSDKVLCLGVELKNE*
Ga0104346_100403Ga0104346_10040321F090484MIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIKDKLVKRFENVQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKSGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIGNMDISTQSLPNISITVGNDKELDGESVFKDIPLEELSFYSDTYLYPSSQYSSL*
Ga0104346_100908Ga0104346_1009084F099406MAEIGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGGKVLESLGMVSTRVDSTYLDLSIFPSTSGTLDEDSYAKVMDAYNNRITLGKLSFYYFSLDYFLDNDNSELKIIAVLFNNTNSKEDVSGSYIDIEMVTYIVAQDKTYRAIANTATLFNTMLSYLKFMAKTPKVVTTLASLPIDAHNIIANVASATNLSMAVSSDDVGREWQVRVNNTTGTDITQPLPTSGLFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA*
Ga0104346_110308Ga0104346_1103081F074964KENASNLVGAVKLYNALFANCADLKAICKALEIPAEYAVKVASLAKDKKRLVAVCSQMLPKVDDTFVKFALYSKVYKDTNVDKEKGIEAKTADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESTQQ*
Ga0104346_110814Ga0104346_1108141F074964KENASNLVGAVKLYNALFANCADLKAVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFIKFSLYSKVYKDNKVDKEKGIEAKAADWCSDNVVYGGEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0104346_113372Ga0104346_1133721F087335MIELYFNDANLLPENREEEQYAEATLNNILAGKTADTGMCILPCFYDAPLHKGLLYHLNDGTTLRIRPILNEAGEPELLIRGVTEETVEEMMEGVKP*
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