Sample 3300007332

3300007332: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 Surf_A metaT (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300007332 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114292 \| Gp0119821 \| Ga0079256
Sample Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 Surf_A metaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	119364426
Sequencing Scaffolds	35
Novel Protein Genes	39
Associated Families	30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	19
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus subsp. pastoris → Prochlorococcus marinus subsp. pastoris str. CCMP1986	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Libanvirus → unclassified Libanvirus → Libanvirus sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → unclassified viruses → Virus sp.	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Haifavirus → Haifavirus tim68	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Southern Atlantic ocean
Coordinates	Lat. (^o)	-28.2362	Long. (^o)	-38.4949	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000613	Metagenome / Metatranscriptome	985	Y
F001756	Metagenome / Metatranscriptome	641	Y
F005533	Metagenome / Metatranscriptome	397	Y
F005911	Metagenome / Metatranscriptome	386	Y
F007318	Metagenome / Metatranscriptome	353	Y
F013776	Metagenome / Metatranscriptome	268	Y
F015063	Metagenome / Metatranscriptome	257	Y
F016994	Metagenome / Metatranscriptome	243	N
F020014	Metagenome / Metatranscriptome	226	Y
F020386	Metagenome / Metatranscriptome	224	Y
F021115	Metagenome / Metatranscriptome	220	N
F023529	Metatranscriptome	209	Y
F023620	Metagenome / Metatranscriptome	209	Y
F025306	Metagenome / Metatranscriptome	202	N
F028201	Metagenome / Metatranscriptome	192	Y
F029784	Metagenome / Metatranscriptome	187	N
F035327	Metagenome / Metatranscriptome	172	N
F036277	Metagenome / Metatranscriptome	170	Y
F041824	Metagenome / Metatranscriptome	159	N
F042354	Metagenome / Metatranscriptome	158	Y
F043982	Metagenome / Metatranscriptome	155	Y
F046429	Metagenome / Metatranscriptome	151	N
F054104	Metagenome / Metatranscriptome	140	Y
F056635	Metatranscriptome	137	N
F057206	Metagenome / Metatranscriptome	136	Y
F071278	Metagenome / Metatranscriptome	122	N
F077350	Metagenome / Metatranscriptome	117	Y
F090441	Metatranscriptome	108	N
F101219	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0079256_1003724	Not Available	1268	Open in IMG/M
Ga0079256_1011937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus subsp. pastoris → Prochlorococcus marinus subsp. pastoris str. CCMP1986	536	Open in IMG/M
Ga0079256_1012230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1158	Open in IMG/M
Ga0079256_1016457	Not Available	754	Open in IMG/M
Ga0079256_1019355	Not Available	927	Open in IMG/M
Ga0079256_1019797	Not Available	521	Open in IMG/M
Ga0079256_1025135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1301	Open in IMG/M
Ga0079256_1037142	Not Available	1448	Open in IMG/M
Ga0079256_1037652	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Libanvirus → unclassified Libanvirus → Libanvirus sp.	541	Open in IMG/M
Ga0079256_1038118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	768	Open in IMG/M
Ga0079256_1051531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	536	Open in IMG/M
Ga0079256_1053041	Not Available	507	Open in IMG/M
Ga0079256_1054512	Not Available	861	Open in IMG/M
Ga0079256_1057788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	524	Open in IMG/M
Ga0079256_1116470	Not Available	669	Open in IMG/M
Ga0079256_1151532	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	943	Open in IMG/M
Ga0079256_1186429	Not Available	761	Open in IMG/M
Ga0079256_1190426	Not Available	652	Open in IMG/M
Ga0079256_1190769	Not Available	619	Open in IMG/M
Ga0079256_1217879	Not Available	710	Open in IMG/M
Ga0079256_1223726	All Organisms → cellular organisms → Bacteria → Proteobacteria	962	Open in IMG/M
Ga0079256_1232701	Not Available	520	Open in IMG/M
Ga0079256_1236411	Not Available	917	Open in IMG/M
Ga0079256_1258959	Not Available	759	Open in IMG/M
Ga0079256_1259857	Not Available	568	Open in IMG/M
Ga0079256_1276605	Not Available	579	Open in IMG/M
Ga0079256_1277431	All Organisms → Viruses → unclassified viruses → Virus sp.	2166	Open in IMG/M
Ga0079256_1278700	Not Available	682	Open in IMG/M
Ga0079256_1279463	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	557	Open in IMG/M
Ga0079256_1296923	All Organisms → Viruses → unclassified viruses → Virus sp.	1665	Open in IMG/M
Ga0079256_1310760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	631	Open in IMG/M
Ga0079256_1311081	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Haifavirus → Haifavirus tim68	549	Open in IMG/M
Ga0079256_1313654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	654	Open in IMG/M
Ga0079256_1319317	Not Available	1727	Open in IMG/M
Ga0079256_1332684	All Organisms → Viruses → Predicted Viral	1135	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0079256_1003724	Ga0079256_10037241	F025306	MKPILFTEAELETIERAMDDYACYSDPDTPASDLIGGLPVMDRINSIMEKITTAYCDL*
Ga0079256_1011937	Ga0079256_10119371	F041824	LQNRPIYHLIDRSTTQAIGRGLEQVQELHHGEHVFQWKVIRIL*
Ga0079256_1012230	Ga0079256_10122303	F001756	ILELNKPRKKLCPKLEKNVNINPNTITFKLKFLNIKKYDF*
Ga0079256_1016457	Ga0079256_10164572	F020014	CPYYRDEPNPEYAPKKKSVNKPRAARPPIVATIQRGIRPISLISIIIKD*
Ga0079256_1019355	Ga0079256_10193551	F090441	VWELATLSFPDSLALGALITRRVIVGCQFPDAASYRKNDSNTFRSHSGT*
Ga0079256_1019797	Ga0079256_10197971	F035327	LIKTNILTSKVLAEGLKKTVKLEGVDEKKEPYEKTKKITKGVVVALSSEAKQKVIKS
Ga0079256_1025135	Ga0079256_10251351	F007318	MMNRQEILIKSNIKKKTELTVFFETVTIIAETIAISENI*
Ga0079256_1037142	Ga0079256_10371422	F035327	LIKTDIQTSKVLAEGLKKIVKLEGVDEKKEPYEKTKKVTKGVVVALSS
Ga0079256_1037652	Ga0079256_10376522	F005533	MDYTKNETALLTLISNINNQFYYIGEENDKVAPIDVKKFTEHCVAFIDSLEIEK*
Ga0079256_1038118	Ga0079256_10381181	F021115	VPLLISKNTKEEKKMRNHETTAELDNPLSSSKIGAYSGSIKATFFKDSKRYTGIPSVEINDELRAIICNSKIKIQPYTVKNKNSHFEIVLPKNIKGGLANLIIVKTLTTVGLKHKCISCKLEVDGNEKTICFHY*
Ga0079256_1051531	Ga0079256_10515312	F036277	LCSNPFVDKSTQYELHSPNKNKIDLSYLGSASLYK*
Ga0079256_1053041	Ga0079256_10530411	F101219	IISLPLVFATFFFVWKKQAHEVTPESFQEETSQPVDDQVVEPAAPSMAKVENTESEVAQLGSHEKPVEKIDNDIRIAPSQAPPVSNSKPRVLEILDDVKIATKESVIKNAEGNQALDTRISLVETSMKHPLMILEEKGTKFGQTGEEVITANAHVATHFMLQVVPGTN
Ga0079256_1054512	Ga0079256_10545121	F090441	WELATLSFPDSLALGALITRRVIVGCQFPDAASYRKNDCDTFRSHSGT*
Ga0079256_1057788	Ga0079256_10577882	F036277	LCSNPFVDKSTQYELHSPNKNKIDLGYLGSASLNN*
Ga0079256_1116470	Ga0079256_11164701	F023529	DTKQGSAQPSYYAVAHADMTHPSAVTAGDTIYVGEQRCDVVSSDADSTAGLKGEGSAVETYHSSSVVCAQALSENAHSTSDAIVTHDPIEVLFEGATQSCTSTDRPALRFIHDLATTTSSNLCADATACATVLEYNGQNRLVRWANGDTIADVSTHELMDNNDIAVNDRVSIRTMNSHTYETRTVDYINLQGLGASTDNFFTVSQPFTAAHAEKRIFLNFKG
Ga0079256_1151532	Ga0079256_11515321	F016994	MATENNTTFVAADNSSLLGKELEFITVDAGEELANHQAKNETQNAIENTIRQFGNIVGAGPLFDTNASRTYIVEGTDMFVGAPASSGGTFTFTETGADGSAVSTLVTALKALGTIDGIDLNDGGTTAKREVLEL*
Ga0079256_1151532	Ga0079256_11515322	F020386	MPAVSRNNFQSLATAAEFEGVDVSFLTVDFINAMNAETGDPQNDSTVAGLALVRHALENLGFNIIGNGALGVSNTEMTYMVRTDSVDATLLATGSDNTIRDAVRAVDTNGRAASATPRNTANFSAATVTIQSLGMTDTGVNA*
Ga0079256_1162999	Ga0079256_11629991	F000023	DATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQES
Ga0079256_1186429	Ga0079256_11864291	F005911	MLKNKILNFLNSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKAKIDGADINQARLGSGDEDQIEAPINELFHNGNFIKLSEMVKKAVIIVSDDPTATARKGYDIGYDTENSGVLIKFAAADGNVIQPDQGDADDTIVADVHLFVNLAGTADTDANAPYVDGTPFYYILMDATTAGLADSLETINSTIYPTGILATNGGGPQA
Ga0079256_1190426	Ga0079256_11904261	F005911	MSIKSKILNMLNSKKGNALLLATAGTIAATFGVYFFVTLTTLSEDSKQRVAHLYNAYQMGQAIKAKIDGADINQARLGSGTESNIEAPIDDLFHNGNFVTLAQMVKKAIVIIADDPTATARSGSDLGYDLINSGALIKYADAAGNVIEPDSDDGSDSVPIVTDVQVFVNLAGTADATTNSPYTAGEPFYYILMD
Ga0079256_1190769	Ga0079256_11907692	F057206	FRPFFFSFLAIARVTKITRSVHGLDWEAVATLLGDVATVKRSITRLNARLNGMDNAVEPPSYDWKQQVQAAMLQPAPKTKVGG*
Ga0079256_1196686	Ga0079256_11966861	F054104	MIKKGLEETFETTENLIKNVENKAFISIQRYMIFITASRILRKFLSLSEAEQSKIVEITVSKLGGRK*
Ga0079256_1217879	Ga0079256_12178791	F071278	LKKRLQFLLKSKKGNALLLATAGAIAATFSVYFFVSISTLSDDSKQRVTHLYNAYQMALSVKGKINGDSMQANKLDGTNVEDSIEDSLDPLFHNGSFITLKEMVIASIIIVQMDPTTTSERGEKIPYDVNNSGVLIKFANSTDDVITPSAENRPIADRANLAKVHDLHLFVNLAGTTDIDSRPNGPYAVGDPFYYVVMASDADTGRTDGLTDDLKTVNLTQFPTGMLATNQGGPQA
Ga0079256_1223726	Ga0079256_12237261	F046429	MRASGQITDQEIAIQEGDLIIAKNVVTEARRIIGSANDVLTESTQRRVLKG*
Ga0079256_1232701	Ga0079256_12327011	F042354	LIMKKSNPFVILVALLLSATSAFSQASVSAGLSYGSFNYDISGTKYTGDGGVLNLDGQLSPSITYSLSMSDGKFDDQVLSNSEGSITYNVYPNIGVHFMGSQIKLATVQETDTSLGFSYNINTPTLGINIFAGSDINNYGKFYTYGTKINLGVTRGSSLILSYKTEDRKQKA
Ga0079256_1236411	Ga0079256_12364111	F028201	EYNQKQSKEIYKALADSKIDLMEYFLGADPKKTQYYKNYLKRK*
Ga0079256_1258959	Ga0079256_12589591	F005911	MSLKSKLQQFLNSKKGNALLLATAGAIAATFSVYFFVSLTNLSEDSKQRVAHLYNAYQMGQSLKAKIDGADINQARLGGGDEDEIEAPIDDVFHNGVFITLKEMVKKAVIIVSDDPTATARKGYDIGYDLDNSGVLIKFAAADGNVIQPDQGDADDTIVSDVHLFVNLAGTADTDSNAPYVDGTPFYYILMDSTTAGLAASLETIDLSIYATGILATNGGGPQAEVSVVLP
Ga0079256_1259857	Ga0079256_12598571	F056635	QQSSTMKFALLALTIAVASATKCSHTTCKMVDVDSLFPGHLGSGYKVMQITHSNEETVCHKHSNSHDNKGDAAFAWQETGNKLHCKIIDSNPIKQGTQCECHKLHTNGQDPSEWDQGVAHDLQHIAKKTGTSTYAENSGDNPLDTKSKEDRIAQRNTHL*
Ga0079256_1276605	Ga0079256_12766051	F015063	KNIDASNIDINDFTQDPFSKKDFTTSIEKWGGGVSNWLDGPVMKLHAKDNGVVSETGIDLISKAGFPGHKHKPDVDKGTYELRVEHDQDTDGAINIDDVMGVLSLSRGITQTTSEEHKLAADWNGDGLINIDDVMGVLSRSRGIEKNDEWRFYDKSSNTSLWDNASKKNKMDIVLEDDKDIELSAILRGDVN
Ga0079256_1277431	Ga0079256_12774314	F043982	MYQVLLYSSLFCSILAFIMCLYACSRVGNFIKSTEGLDWSAIANITGDLATLKKTIQTLNNRMNGMHSPKVAENEIMLQLLKNAPKQQVNGEIKNIGG*
Ga0079256_1278700	Ga0079256_12787001	F005911	KGGRKTMSLKTRLLTMLNSKKGSALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKGKIDGADINQARLGSGTEADIESPVSELFHNGNFITLKEMVKKAVIIVSDDPTATARSGVDTAYDADNSGVLIKFADADGTVIADGTGGDTIVADVHLFVNLAGTADANTNAPYTAGEPFYYILMDDVTAGFNDATARTIDLTQFPTGILATNDGGP
Ga0079256_1279463	Ga0079256_12794633	F013776	WIHVEADSVEDAEARLHESFGHYYVITETGEELSNGWETTGEIEEDPECAFNDYEEEEN*
Ga0079256_1296923	Ga0079256_12969232	F043982	LALIACARVGKFINSTNGLDWSSVANITGDLATLKKTIQTLNNRMNGMHSPKIAEQELMMQLLNKQQNQQINGKIQGG*
Ga0079256_1296923	Ga0079256_12969234	F000613	MPLVKKKLSIAAGATSDQVLAGTTYEYVDPGTRIVVAAAVDTAGTATADTTMDFTVNNAEFSKNASVSTLVSGQPFGWSGTGYVMNDMVTTGQVRNRPVITFNNG
Ga0079256_1310760	Ga0079256_13107601	F035327	LIKTDMLTSKVLGEGLKKIVKLEGVDEKKEPYEKTKKITKGVVVSLSSEAKQKVIKSL*
Ga0079256_1311081	Ga0079256_13110811	F029784	MCSQIYSHPVEGYKCFANANKSQGTYYTCCDLDTREIRYVTYIYDGYFMGYYLVQSATKVTENFANCQEKIFLSSASNKWPYYKGNDDEYTIDRQYPMQYDIPSLDEVEYSYLDSLLTAGTSK*
Ga0079256_1313654	Ga0079256_13136542	F042354	ISYASFSYDNSGTKYNGDGAVIHLDGLLATSISFSANVSDGKFDNQVLSNNEGSITYNVYPNIGVYLMSSQIKVATVNDSTTSLGFSYSINSPSLRLKAFVGSFTDNYGKFYTYGTNIDLGVAKGTSLIVSYKTEDRKQKATTMDARFVYDLSSNLGLNLGYKSTETKDANGSAVVLKGNTTYAGIVYRF*
Ga0079256_1319317	Ga0079256_13193171	F077350	LEVAVIDSALANQIQKTETDPNQPDIQLLLEELEGKLRGALDVLSPSVKAMCDNLKEAASDIRKDKDATKLWGTLNDLQVFLSLVQQICTSVGTQGPKVVEFDNALGDALGTLETVVLDSEDADEVAAFVEKSLIGAFDKWGEAEAELRALTCM*
Ga0079256_1332684	Ga0079256_13326844	F023620	MKTAPFLSEYDLSTVYYLCSFYMDNADLDFQDKAYIKELQKRVDKLMEVTK*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007332: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 Surf_A metaT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences