NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007348

3300007348: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763860675 reassembly



Overview

Basic Information
IMG/M Taxon OID3300007348 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052663 | Ga0104342
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 763860675 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size117883956
Sequencing Scaffolds18
Novel Protein Genes18
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip21
All Organisms → cellular organisms → Bacteria2
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.1
All Organisms → Viruses → Predicted Viral1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042387Metagenome158N
F045567Metagenome152N
F047127Metagenome150N
F047508Metagenome149N
F053092Metagenome141N
F054111Metagenome140N
F061925Metagenome131N
F063777Metagenome129N
F064818Metagenome128N
F071329Metagenome122N
F080165Metagenome115N
F081454Metagenome114N
F089056Metagenome109N
F097490Metagenome104N
F097525Metagenome104N
F097526Metagenome104Y
F105377Metagenome100Y
F105380Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0104342_100096All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes64433Open in IMG/M
Ga0104342_101231All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes10714Open in IMG/M
Ga0104342_101467All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga9491Open in IMG/M
Ga0104342_102057All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae7541Open in IMG/M
Ga0104342_102520All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium6446Open in IMG/M
Ga0104342_103299All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes5206Open in IMG/M
Ga0104342_103704All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales4779Open in IMG/M
Ga0104342_103939All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip24551Open in IMG/M
Ga0104342_104852All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae3811Open in IMG/M
Ga0104342_108465All Organisms → cellular organisms → Bacteria2267Open in IMG/M
Ga0104342_109171Not Available2093Open in IMG/M
Ga0104342_109522All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga2015Open in IMG/M
Ga0104342_110143All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1899Open in IMG/M
Ga0104342_110384All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1864Open in IMG/M
Ga0104342_111019All Organisms → cellular organisms → Bacteria → Proteobacteria1757Open in IMG/M
Ga0104342_117130All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.1164Open in IMG/M
Ga0104342_119684All Organisms → Viruses → Predicted Viral1015Open in IMG/M
Ga0104342_127095All Organisms → cellular organisms → Bacteria755Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0104342_100096Ga0104342_10009645F105377VRAEVRDFDKLPLLTPEEAFERAREVGRNRLLFDHDYRVRGLDDWKAIETLLRQYDVDDAFIASFGLKRFEEIFDVFAMLSDRGWSLWQTSANVYVDGELRTVPAIRAHYRGD*
Ga0104342_101231Ga0104342_10123113F071329MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED*
Ga0104342_101467Ga0104342_1014676F064818MNKDEFLKELIAFIADNSSELHPKVFKNKIRFGINKNSYTEMRFDYSQNYKGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0104342_102057Ga0104342_1020574F047127MKKTFAFILLSIISLAKAQLTEIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDSDIREILEKYNSK*
Ga0104342_102520Ga0104342_1025202F063777LKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNRLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEIIISE*
Ga0104342_103299Ga0104342_1032996F080165MKSIKILLLLLSLTACNNKTKTISTLDLEKVVINYKDLPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLQYTFTRYILR*
Ga0104342_103704Ga0104342_1037041F042387MKRIILFFMAGLFLISCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERVVFVYEKDFITSKIRYSQSGEELGKTNYQYNNGKLSSVIDEAVISDSGIQYKKVITREYSYNSSEVSVNENVKYHSESYAYNLKDENFTHTYVLNGENIIKIHHEISKNVPSGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSVLAVEFCGLDKDENTIADYLNFRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVTTMVYEYNK*
Ga0104342_103939Ga0104342_1039397F105380MSILELDSSQYVKQGRIFKKFDSALLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGGRLVYNRLCKGRMMDDISADDYEAWKRIPVNRASNFVNKFISARGNSDLDFISTPIRSN
Ga0104342_104852Ga0104342_1048521F097490MNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPVVSIMTKYLQHIGGEMIEGQIHHKKIDNIVCSVYIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYSNEMGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0104342_108465Ga0104342_1084654F097525MQQKKIMFKIQNAYQKIIFSIHGHRDRKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLDLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYELTFPLDDKTLAMIIKELGEAVASFKKE*
Ga0104342_109171Ga0104342_1091713F047508MLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFKNVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0104342_109522Ga0104342_1095223F054111LEKENMNKPLDNITHEVFLKLMEHLKNLQELTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSL*
Ga0104342_110143Ga0104342_1101431F089056TIVLSASFPLIKKMNVFCRIILPLLCIISCSKRKEADNTMVLEKNHAFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ*
Ga0104342_110384Ga0104342_1103841F081454YSYLKKRYFFKYEYLPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVKMKMNMNMGSTISTQKKQDNKIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLSGDIVNGKKMEVKNVEGNINEETKKILVESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSIITQQKIK*
Ga0104342_111019Ga0104342_1110191F097526CERLDDDTVAALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNGHPDPAEQARRVQWDCQFTVLQQQARMAHCEIVNADNAAVSRLTRQCEQNGSCDTAIPSPHDDGYGFTAGLRDIPLNTSQTALLWRMALLTIAEMTDTAPSLVACYLNGTGGEHLGRALAEKTVYPVTVVSNLAWLLHDQYKSGQLQRDLRHTAATSGLASTEAMQAAVPVSRQQDGRQSP*
Ga0104342_117130Ga0104342_1171302F053092MQSDQGLILCLTHSLLVLGALILEPAEMEDTMDDHTVQLFGILIAKELGIATHRIEADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK*
Ga0104342_119684Ga0104342_1196841F045567MRQRDGRDTLTEELEGGITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0104342_127095Ga0104342_1270952F061925MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDSIPYDAKFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHL
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