NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007497

3300007497: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 404239096 reassembly



Overview

Basic Information
IMG/M Taxon OID3300007497 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052752 | Ga0104979
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 404239096 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size71681077
Sequencing Scaffolds10
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 4731
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2793
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F030786Metagenome184N
F036281Metagenome170N
F040149Metagenome162N
F043235Metagenome156N
F043991Metagenome155N
F051214Metagenome144N
F053092Metagenome141N
F054111Metagenome140N
F061927Metagenome131N
F077404Metagenome117N
F098763Metagenome103N
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0104979_100023All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes42919Open in IMG/M
Ga0104979_100045All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 47331784Open in IMG/M
Ga0104979_100664All Organisms → Viruses8545Open in IMG/M
Ga0104979_101742All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2794584Open in IMG/M
Ga0104979_101871All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2794368Open in IMG/M
Ga0104979_105470All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2792039Open in IMG/M
Ga0104979_109333All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1366Open in IMG/M
Ga0104979_111211All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1187Open in IMG/M
Ga0104979_126206All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium623Open in IMG/M
Ga0104979_131361All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium538Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0104979_100023Ga0104979_10002310F027205VASRLIVSADDILKAVKESEEFERNALSEARKRDRAAGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0104979_100023Ga0104979_10002313F043991MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWVGKYSHQMHFDLLDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0104979_100023Ga0104979_10002314F051214MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPVYIYNNREYQIACEFLRQIMHDKIDLKDEWIA*
Ga0104979_100023Ga0104979_10002317F018385MAEYVNQWGPYKELSIENDRDPVLDDPIIYGVNVKHFILTVYSPEGRVSKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYHEEVK*
Ga0104979_100023Ga0104979_1000239F036281MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKELFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREKDHWYTFRMSDAQKSKFTRHTITNEKGHQSYDWVLKNVEWAADMIRYF*
Ga0104979_100045Ga0104979_10004522F077404MAQQIIITHKLVAAALSLKEPTQIGNTKNPFAMNILKTAFAFFFALCFMMGANSYAQTTNRINAEASKRELKRNAIYIPPALEEYADTILLHQRFIVENKGNYLYTPFTKDNEPSIPFNYGFLHPLGERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRRIKSDFSYGHPYQGFTDYDRVELSYFESYGRQAALETANTWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLSLYFLMIDSVALNFDTKVLPYIKGVFHFNRIQ*
Ga0104979_100664Ga0104979_1006642F105377VRAEVRDFNRLPLLTPEEAFERAREMGWNRPLFDLDYQVRGLGDWKTIEALLRQYDVEDAVIASFGLKSFEEILDVIAMLHERGWHIWQTSAKVYVSGELRTVQAIQARYRGD*
Ga0104979_101742Ga0104979_1017422F040149VADEGAEELRGEVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWHYDSEDAIHDFIYDISVPKGHTLTAVRERETVVMQLFNIHRMF*
Ga0104979_101871Ga0104979_1018712F098763MDRRTSLRVLSTVLYFTTKLFKAVVRTTISYNPSDEVEGKGGMNAIPTAVDE*
Ga0104979_105470Ga0104979_1054703F053092MQSDQGLILCLTHALLVLRALVLEPAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0104979_109333Ga0104979_1093332F043235MDEVVPSDEGHLLIDLCDDDPRSLCSGLGIVTRYPEGAIALFIGLAHRDQCDIYRIDTIPKKVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0104979_111211Ga0104979_1112113F061927MKNSIFILSAMFILGACSSDSAQKATEKIKNAYSDGLRKTFIEEGVKSCIKNSGLKESEAREYCECAMNKLNESLSNDEIIDISMDNPPKDLDERVDKAIDSCIGE*
Ga0104979_126206Ga0104979_1262062F030786MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDGDGADKIFENNNNRILNTINSQHISFNSQSAEYSKPQLFLLYQSLKVDC*
Ga0104979_131361Ga0104979_1313611F054111MVFKNLEKASMDKPLDNITHEVFLKLMEHLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETESLSIVDRDLFLNILDKEILFLI*
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