NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007575

3300007575: Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C_top_diel_T=7 metaT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300007575 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0067861 | Gp0123762 | Ga0099844
Sample NameIron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C_top_diel_T=7 metaT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size15189778
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomehot springmicrobial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: Yellowstone National Park, Wyoming
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053392Metagenome / Metatranscriptome141N
F094112Metagenome / Metatranscriptome106N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0099844_110210Not Available933Open in IMG/M
Ga0099844_134465Not Available725Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0099844_110210Ga0099844_1102101F053392VRRMSVPSYVTLTGPQTTVMPASFTIAASALAGTVVQGSILAFGPQSPAVAAPQVPITEVWSIVDLYIIGTVTPDALLSIYINGYPQDINPDLNSLNLNNLTRWKLMQALKLPPASTWFTTITLLGANGTSQQTYTVYFSVIRAPYLPSA
Ga0099844_134465Ga0099844_1344652F094112MSQSNIAVYNRGYNTITITNPTTGKTSVNLGLTTYNYPILAIHIYIYNTSSPASGYVKAVITPLDELVTGYTGYSPTIEYLIDAYKGAMYIPLAPHEYVNITISISAGANLEYDAILYDWMGEN*

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