Basic Information | |
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IMG/M Taxon OID | 3300007631 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114514 | Gp0125935 | Ga0102939 |
Sample Name | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 353018812 |
Sequencing Scaffolds | 37 |
Novel Protein Genes | 39 |
Associated Families | 23 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → Viruses → Predicted Viral | 7 |
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria | 1 |
Not Available | 21 |
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W | 1 |
All Organisms → Viruses | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 2 |
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287 | 1 |
All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus | 1 |
All Organisms → Viruses → environmental samples → uncultured virus | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration. |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration. |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | aquatic biome → pond → saline water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
Location Information | ||||||||
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Location | South San Francisco, USA | |||||||
Coordinates | Lat. (o) | 37.4961 | Long. (o) | -122.1331 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009454 | Metagenome | 317 | Y |
F018646 | Metagenome / Metatranscriptome | 234 | Y |
F026202 | Metagenome | 198 | Y |
F038111 | Metagenome | 166 | N |
F041612 | Metagenome | 159 | N |
F054456 | Metagenome | 140 | N |
F062489 | Metagenome | 130 | Y |
F066493 | Metagenome | 126 | Y |
F066527 | Metagenome / Metatranscriptome | 126 | N |
F066711 | Metagenome / Metatranscriptome | 126 | Y |
F072017 | Metagenome | 121 | Y |
F079661 | Metagenome | 115 | Y |
F083454 | Metagenome | 113 | N |
F089905 | Metagenome | 108 | N |
F089940 | Metagenome | 108 | Y |
F091393 | Metagenome / Metatranscriptome | 107 | Y |
F094957 | Metagenome | 105 | N |
F096726 | Metagenome | 104 | N |
F097996 | Metagenome | 104 | N |
F098765 | Metagenome | 103 | N |
F098766 | Metagenome | 103 | Y |
F099972 | Metagenome | 103 | Y |
F104555 | Metagenome | 100 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0102939_1010079 | All Organisms → Viruses → Predicted Viral | 3141 | Open in IMG/M |
Ga0102939_1012766 | All Organisms → Viruses → Predicted Viral | 2784 | Open in IMG/M |
Ga0102939_1016898 | All Organisms → Viruses → Predicted Viral | 2388 | Open in IMG/M |
Ga0102939_1023139 | All Organisms → Viruses → Predicted Viral | 2012 | Open in IMG/M |
Ga0102939_1025372 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria | 1916 | Open in IMG/M |
Ga0102939_1026345 | All Organisms → Viruses → Predicted Viral | 1877 | Open in IMG/M |
Ga0102939_1033773 | Not Available | 1631 | Open in IMG/M |
Ga0102939_1034399 | Not Available | 1614 | Open in IMG/M |
Ga0102939_1036621 | All Organisms → Viruses → Predicted Viral | 1558 | Open in IMG/M |
Ga0102939_1042386 | All Organisms → Viruses → Predicted Viral | 1429 | Open in IMG/M |
Ga0102939_1043193 | Not Available | 1413 | Open in IMG/M |
Ga0102939_1047500 | Not Available | 1337 | Open in IMG/M |
Ga0102939_1053949 | Not Available | 1239 | Open in IMG/M |
Ga0102939_1058408 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W | 1184 | Open in IMG/M |
Ga0102939_1065477 | Not Available | 1104 | Open in IMG/M |
Ga0102939_1070061 | Not Available | 1059 | Open in IMG/M |
Ga0102939_1090678 | Not Available | 902 | Open in IMG/M |
Ga0102939_1102255 | All Organisms → Viruses | 837 | Open in IMG/M |
Ga0102939_1117530 | Not Available | 766 | Open in IMG/M |
Ga0102939_1121164 | Not Available | 751 | Open in IMG/M |
Ga0102939_1125859 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 733 | Open in IMG/M |
Ga0102939_1127206 | Not Available | 728 | Open in IMG/M |
Ga0102939_1130434 | Not Available | 716 | Open in IMG/M |
Ga0102939_1130782 | Not Available | 715 | Open in IMG/M |
Ga0102939_1144431 | Not Available | 671 | Open in IMG/M |
Ga0102939_1155155 | Not Available | 641 | Open in IMG/M |
Ga0102939_1172339 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium | 599 | Open in IMG/M |
Ga0102939_1176123 | Not Available | 591 | Open in IMG/M |
Ga0102939_1176183 | Not Available | 590 | Open in IMG/M |
Ga0102939_1187763 | Not Available | 567 | Open in IMG/M |
Ga0102939_1196841 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 550 | Open in IMG/M |
Ga0102939_1201698 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287 | 542 | Open in IMG/M |
Ga0102939_1209449 | Not Available | 529 | Open in IMG/M |
Ga0102939_1209452 | Not Available | 529 | Open in IMG/M |
Ga0102939_1217424 | All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus | 516 | Open in IMG/M |
Ga0102939_1219461 | Not Available | 513 | Open in IMG/M |
Ga0102939_1223418 | All Organisms → Viruses → environmental samples → uncultured virus | 508 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0102939_1010079 | Ga0102939_10100791 | F038111 | MIHRVPVVNRDNYTIWLENYKNIANFIHAEVYKYNKTTREDFGKDLDKLMDLHQNSLYVLVETDNKKLKKFMNIYGLTLDHKPLCDD |
Ga0102939_1012766 | Ga0102939_10127661 | F038111 | MIHRVPVVNRPEYTIWLENYKGIANFIHADVYKYNKTVREDFGKNLDKLMDLHVDPLYVLTETDNKKLKKFMSIYGLELDHRPNCNDGVAREVFRLTRRQ* |
Ga0102939_1016898 | Ga0102939_10168982 | F097996 | MAINRDGMHPRYLGWQVDWPIFVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLKSLVTQLNVIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWIAEDFYTIRDTILGD* |
Ga0102939_1023139 | Ga0102939_10231393 | F066711 | VAKVIRTRWYSFIGDCYEYHGQDPSSRERTHSDVGWRLRSKIYRGVSTFKNLPLSESLEQRPCPLDERDSGIYILRDSIFPEGFYVGKGKKMHERIWKHGVKLTGTQRWNKAVETTVEFERYRKLREAKGLNTLEDVEIAFWFTDKIDELEDQILGAYTAKYNRTPFCNSAEEAMFEAFDI* |
Ga0102939_1025372 | Ga0102939_10253722 | F066493 | MRQSREWDDGLIDVAGELVKEHSAEGAIERLQRRRQTSDDELQARCNEAIAYIRREVQDE |
Ga0102939_1026345 | Ga0102939_10263456 | F079661 | PWTADMTKTTIELPESTRDKLKAERKPHESNYGETIERLLGDTSGGSLWTEQEIRDMIEREIEQHARH* |
Ga0102939_1033773 | Ga0102939_10337732 | F089940 | MDLTVKEKKNYIMKYVAVLLVVLGLAIIVGAEAHDWFPMFITQIALGMTVSFSGILFALQSGIDDDDD* |
Ga0102939_1034399 | Ga0102939_10343996 | F089940 | AFFIVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFAAQIDTEEDDT* |
Ga0102939_1036621 | Ga0102939_10366211 | F089905 | MRTVKEVEQDIREAESAQAETEFSSTMWDSLNAEITGLHAELKRATYHWDRLKLCGMMGVDTH |
Ga0102939_1042386 | Ga0102939_10423861 | F094957 | NTMKALTGYMAQINAHLEIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGTLSRAEVEQRTNTWLDAITELDAIEQELTA* |
Ga0102939_1043193 | Ga0102939_10431931 | F026202 | MKNVVSCDAASKAAVLSVSSKELLVRASVLAELDLNDMGGTMLPVEVLWASQSRLEGCGWCWGSASACSGCH* |
Ga0102939_1047500 | Ga0102939_10475002 | F094957 | MKALTEYMAQINAHLAIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGELTRAEVEARTNTWLDAITELDAIEQELTA* |
Ga0102939_1053949 | Ga0102939_10539493 | F096726 | MTRDEWIDPADTEASIRDHVERLARGDRLDVDTPTGTERIERRGPEWRLTHLGTGGGWCWSERMDTRQLVDYLTQWRSQSQYDPITVRFVEDGGE* |
Ga0102939_1058408 | Ga0102939_10584081 | F041612 | RDLLAADAVTAATVRDGVELQVRAGLRVRDGDGVVARASATDTAPVAVTQQIDPAAHGTVGGAGGVSIETA* |
Ga0102939_1065477 | Ga0102939_10654772 | F066493 | MSQSREWTDGVIDVADELVQEHSAEGAIERLERRKESTRSDDLEARCREAIDWIESEVQSDD* |
Ga0102939_1070061 | Ga0102939_10700613 | F091393 | MSEKKTAEEIAQYYNAAMDSVNLINKGQQEDMSDE |
Ga0102939_1090678 | Ga0102939_10906782 | F089940 | MVSTVKERRNYTMKYVSAALIVLGLSISIGAEAHDWFPMFVAQIALGMTVSFSGVLFATQIDFDNDDN* |
Ga0102939_1097993 | Ga0102939_10979933 | F104555 | DLSFRSVLTMRDDNPDNMTAFERLDWILGSPFGGEDLAALPVSDDQTIRQAIRRSIDANGIQATGEHWAAVLDTIGPVPQLYLDTVKVIFNQEVSDCF* |
Ga0102939_1102255 | Ga0102939_11022551 | F062489 | MGPDAIIIREDVRDGPTRRIVYHPLTTGGYERREQLWRLSIEGWHTTGTEIVEELAIDAPERER* |
Ga0102939_1117530 | Ga0102939_11175302 | F054456 | VNAMYEPTLDFKTDTEQLSPAQAHDRWEDVTNLDTPELERLEDSRRNELYLDAAAGNQGDDNPPIPGGPLDDAQHLASTPRDEWGPDERAEAEEALNFLSRTLPQFEQSEGEPLIEDESPKIHKDELSIMRWGVDPNPEDDFL* |
Ga0102939_1121164 | Ga0102939_11211641 | F079661 | MSNTTIQIPESVRDELRDERLPHESNYGDTIERLLGDSTGGQLWTEQEIRDMAQQEIELVTR |
Ga0102939_1125859 | Ga0102939_11258592 | F038111 | MIPSKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLDLLADLHNLPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIEREVYRLDRRQ* |
Ga0102939_1127206 | Ga0102939_11272062 | F098765 | ASATDTAPLAVTQQIDPAAHGTVGGAGGVTIETG* |
Ga0102939_1130434 | Ga0102939_11304342 | F097996 | FVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLRAVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEDFYTIRDTILGE* |
Ga0102939_1130782 | Ga0102939_11307822 | F097996 | MATNTDGMHPRYLGFQVDWPVFVKMPFSADGHAWKRQEHFNWAERGIDQKQVATLYATGHIYHNYELEKQNKVGDRLGELNSEQLKRLVVQLNDIVKRRTTTTKEFQDKRCKQSKLEDKQRGLVRRFLNRNQWILEDFYEIRDYILSE* |
Ga0102939_1144431 | Ga0102939_11444311 | F066527 | MTNRFYHEDLLDEFGDDLERIFGPIEERTRGLTSLAGQPDGDLKALIKGLKTKVIDCSGFMPKRQPFLNVVKEVLRVMRDSIDPATGKSIFYGYNLPYFITEERVQGVEEFAWDEIYIDYNVQRNIDVAHIIKDILVEWDTKLCDPAHCRMQSDNSLDVNDSQHATCARALVGAAVCPATYIVSDAKSD |
Ga0102939_1155155 | Ga0102939_11551552 | F038111 | MIHRVPVVNKNNYTIWLENYRHIANFIHAEVYKYNKTTREEFGKDLDKLMDLHQNPLYVLTESDNKKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV* |
Ga0102939_1172339 | Ga0102939_11723391 | F009454 | AILEVQQPRSRFQLERFVIGQHKTEEMQFYQTCIELQDMIYKYQSAKLNVQKQELKIKRLRETGDELKELKAQELELGLKQTYTAMQGAEREMLALTEIFYSFPKRYTREEIEAAQPSYWDERLTGNGKAQLMGGSGVNPAHIEAMEQAGVLDKLIEEVQESKRELGL* |
Ga0102939_1176123 | Ga0102939_11761231 | F062489 | AIVIREEVTAGPTRRYVYHPLAAGGYERKTQLWRQATDGWHTTGTEVVESLAIDCPGGER |
Ga0102939_1176183 | Ga0102939_11761831 | F089940 | MKYAAAFFIVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFAAQIDTDD* |
Ga0102939_1180665 | Ga0102939_11806652 | F098765 | VELQVRAGLRVRDGDGVVARASATDTAPLAVTQQIDPAAHGGVGGTGGVTIETG* |
Ga0102939_1187763 | Ga0102939_11877632 | F079661 | MSDTTIQIPESVRDELKDERLPHESNYGETIERLLGDSTGGQLWTEHELKDLIDHRIQFHRR* |
Ga0102939_1196841 | Ga0102939_11968412 | F038111 | MIPSKVPVVNNPDYTIWLENYRNIATFIHADVYKYNKSVRQEFGEDLDKLLRLHNFPLYVLTNKDNTKLKKFMSIYGLVLDHTPLCDDGVEREVYRLDRRV* |
Ga0102939_1201698 | Ga0102939_12016981 | F018646 | MLKRENLPPFKKLPYNFDVEKIQEVLRQMPHVDDLKVKNGYGDKVGGKSSKLQKAFGLKFNTIEDAYEWLQKNDVAESELSKGLNGKRMAWDFRNYVKPFENYIQKDDEGKYEVNGSPYKQIALTEYNPESENRVYDKKIPKSRLDERH |
Ga0102939_1209449 | Ga0102939_12094492 | F062489 | MPGPDAIVIRERRAEGPTRRYVYHPLAAGGYERTEELWREAKDGWHTTGTEVVAALAIEHPGDGSLTIGTE* |
Ga0102939_1209452 | Ga0102939_12094521 | F099972 | TMPKAINGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEMMKALEALSTEAKEDLERHLNDL* |
Ga0102939_1217424 | Ga0102939_12174242 | F098766 | MTHPRCAICGYEAHGDDYVRVEVERVPPEKPPETYYFHTRCFDRTQAWERDL |
Ga0102939_1219461 | Ga0102939_12194611 | F083454 | MSDKTTIGLKISHERNARIERKVDDENYSSRQAYIRELIDDDLGGFDTTVESTTTEHTPDDRRDAEIYEALLDSIPLKGWTRYDRFKG |
Ga0102939_1223418 | Ga0102939_12234182 | F072017 | MSLNQTPSLDSQSDTDIKSTVHKHDAIHRLTQEHIDVLTADDRLLDFYEWQQVIRSSETTVRRLAYSEIEEGVEQ* |
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