NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007631

3300007631: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG



Overview

Basic Information
IMG/M Taxon OID3300007631 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114514 | Gp0125935 | Ga0102939
Sample NameSalt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size353018812
Sequencing Scaffolds37
Novel Protein Genes39
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral7
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria1
Not Available21
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W1
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED2871
All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus1
All Organisms → Viruses → environmental samples → uncultured virus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSalt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomepondsaline water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationSouth San Francisco, USA
CoordinatesLat. (o)37.4961Long. (o)-122.1331Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009454Metagenome317Y
F018646Metagenome / Metatranscriptome234Y
F026202Metagenome198Y
F038111Metagenome166N
F041612Metagenome159N
F054456Metagenome140N
F062489Metagenome130Y
F066493Metagenome126Y
F066527Metagenome / Metatranscriptome126N
F066711Metagenome / Metatranscriptome126Y
F072017Metagenome121Y
F079661Metagenome115Y
F083454Metagenome113N
F089905Metagenome108N
F089940Metagenome108Y
F091393Metagenome / Metatranscriptome107Y
F094957Metagenome105N
F096726Metagenome104N
F097996Metagenome104N
F098765Metagenome103N
F098766Metagenome103Y
F099972Metagenome103Y
F104555Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0102939_1010079All Organisms → Viruses → Predicted Viral3141Open in IMG/M
Ga0102939_1012766All Organisms → Viruses → Predicted Viral2784Open in IMG/M
Ga0102939_1016898All Organisms → Viruses → Predicted Viral2388Open in IMG/M
Ga0102939_1023139All Organisms → Viruses → Predicted Viral2012Open in IMG/M
Ga0102939_1025372All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria1916Open in IMG/M
Ga0102939_1026345All Organisms → Viruses → Predicted Viral1877Open in IMG/M
Ga0102939_1033773Not Available1631Open in IMG/M
Ga0102939_1034399Not Available1614Open in IMG/M
Ga0102939_1036621All Organisms → Viruses → Predicted Viral1558Open in IMG/M
Ga0102939_1042386All Organisms → Viruses → Predicted Viral1429Open in IMG/M
Ga0102939_1043193Not Available1413Open in IMG/M
Ga0102939_1047500Not Available1337Open in IMG/M
Ga0102939_1053949Not Available1239Open in IMG/M
Ga0102939_1058408All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W1184Open in IMG/M
Ga0102939_1065477Not Available1104Open in IMG/M
Ga0102939_1070061Not Available1059Open in IMG/M
Ga0102939_1090678Not Available902Open in IMG/M
Ga0102939_1102255All Organisms → Viruses837Open in IMG/M
Ga0102939_1117530Not Available766Open in IMG/M
Ga0102939_1121164Not Available751Open in IMG/M
Ga0102939_1125859All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae733Open in IMG/M
Ga0102939_1127206Not Available728Open in IMG/M
Ga0102939_1130434Not Available716Open in IMG/M
Ga0102939_1130782Not Available715Open in IMG/M
Ga0102939_1144431Not Available671Open in IMG/M
Ga0102939_1155155Not Available641Open in IMG/M
Ga0102939_1172339All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium599Open in IMG/M
Ga0102939_1176123Not Available591Open in IMG/M
Ga0102939_1176183Not Available590Open in IMG/M
Ga0102939_1187763Not Available567Open in IMG/M
Ga0102939_1196841All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae550Open in IMG/M
Ga0102939_1201698All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287542Open in IMG/M
Ga0102939_1209449Not Available529Open in IMG/M
Ga0102939_1209452Not Available529Open in IMG/M
Ga0102939_1217424All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus516Open in IMG/M
Ga0102939_1219461Not Available513Open in IMG/M
Ga0102939_1223418All Organisms → Viruses → environmental samples → uncultured virus508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0102939_1010079Ga0102939_10100791F038111MIHRVPVVNRDNYTIWLENYKNIANFIHAEVYKYNKTTREDFGKDLDKLMDLHQNSLYVLVETDNKKLKKFMNIYGLTLDHKPLCDD
Ga0102939_1012766Ga0102939_10127661F038111MIHRVPVVNRPEYTIWLENYKGIANFIHADVYKYNKTVREDFGKNLDKLMDLHVDPLYVLTETDNKKLKKFMSIYGLELDHRPNCNDGVAREVFRLTRRQ*
Ga0102939_1016898Ga0102939_10168982F097996MAINRDGMHPRYLGWQVDWPIFVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLKSLVTQLNVIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWIAEDFYTIRDTILGD*
Ga0102939_1023139Ga0102939_10231393F066711VAKVIRTRWYSFIGDCYEYHGQDPSSRERTHSDVGWRLRSKIYRGVSTFKNLPLSESLEQRPCPLDERDSGIYILRDSIFPEGFYVGKGKKMHERIWKHGVKLTGTQRWNKAVETTVEFERYRKLREAKGLNTLEDVEIAFWFTDKIDELEDQILGAYTAKYNRTPFCNSAEEAMFEAFDI*
Ga0102939_1025372Ga0102939_10253722F066493MRQSREWDDGLIDVAGELVKEHSAEGAIERLQRRRQTSDDELQARCNEAIAYIRREVQDE
Ga0102939_1026345Ga0102939_10263456F079661PWTADMTKTTIELPESTRDKLKAERKPHESNYGETIERLLGDTSGGSLWTEQEIRDMIEREIEQHARH*
Ga0102939_1033773Ga0102939_10337732F089940MDLTVKEKKNYIMKYVAVLLVVLGLAIIVGAEAHDWFPMFITQIALGMTVSFSGILFALQSGIDDDDD*
Ga0102939_1034399Ga0102939_10343996F089940AFFIVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFAAQIDTEEDDT*
Ga0102939_1036621Ga0102939_10366211F089905MRTVKEVEQDIREAESAQAETEFSSTMWDSLNAEITGLHAELKRATYHWDRLKLCGMMGVDTH
Ga0102939_1042386Ga0102939_10423861F094957NTMKALTGYMAQINAHLEIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGTLSRAEVEQRTNTWLDAITELDAIEQELTA*
Ga0102939_1043193Ga0102939_10431931F026202MKNVVSCDAASKAAVLSVSSKELLVRASVLAELDLNDMGGTMLPVEVLWASQSRLEGCGWCWGSASACSGCH*
Ga0102939_1047500Ga0102939_10475002F094957MKALTEYMAQINAHLAIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGELTRAEVEARTNTWLDAITELDAIEQELTA*
Ga0102939_1053949Ga0102939_10539493F096726MTRDEWIDPADTEASIRDHVERLARGDRLDVDTPTGTERIERRGPEWRLTHLGTGGGWCWSERMDTRQLVDYLTQWRSQSQYDPITVRFVEDGGE*
Ga0102939_1058408Ga0102939_10584081F041612RDLLAADAVTAATVRDGVELQVRAGLRVRDGDGVVARASATDTAPVAVTQQIDPAAHGTVGGAGGVSIETA*
Ga0102939_1065477Ga0102939_10654772F066493MSQSREWTDGVIDVADELVQEHSAEGAIERLERRKESTRSDDLEARCREAIDWIESEVQSDD*
Ga0102939_1070061Ga0102939_10700613F091393MSEKKTAEEIAQYYNAAMDSVNLINKGQQEDMSDE
Ga0102939_1090678Ga0102939_10906782F089940MVSTVKERRNYTMKYVSAALIVLGLSISIGAEAHDWFPMFVAQIALGMTVSFSGVLFATQIDFDNDDN*
Ga0102939_1097993Ga0102939_10979933F104555DLSFRSVLTMRDDNPDNMTAFERLDWILGSPFGGEDLAALPVSDDQTIRQAIRRSIDANGIQATGEHWAAVLDTIGPVPQLYLDTVKVIFNQEVSDCF*
Ga0102939_1102255Ga0102939_11022551F062489MGPDAIIIREDVRDGPTRRIVYHPLTTGGYERREQLWRLSIEGWHTTGTEIVEELAIDAPERER*
Ga0102939_1117530Ga0102939_11175302F054456VNAMYEPTLDFKTDTEQLSPAQAHDRWEDVTNLDTPELERLEDSRRNELYLDAAAGNQGDDNPPIPGGPLDDAQHLASTPRDEWGPDERAEAEEALNFLSRTLPQFEQSEGEPLIEDESPKIHKDELSIMRWGVDPNPEDDFL*
Ga0102939_1121164Ga0102939_11211641F079661MSNTTIQIPESVRDELRDERLPHESNYGDTIERLLGDSTGGQLWTEQEIRDMAQQEIELVTR
Ga0102939_1125859Ga0102939_11258592F038111MIPSKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLDLLADLHNLPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIEREVYRLDRRQ*
Ga0102939_1127206Ga0102939_11272062F098765ASATDTAPLAVTQQIDPAAHGTVGGAGGVTIETG*
Ga0102939_1130434Ga0102939_11304342F097996FVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLRAVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEDFYTIRDTILGE*
Ga0102939_1130782Ga0102939_11307822F097996MATNTDGMHPRYLGFQVDWPVFVKMPFSADGHAWKRQEHFNWAERGIDQKQVATLYATGHIYHNYELEKQNKVGDRLGELNSEQLKRLVVQLNDIVKRRTTTTKEFQDKRCKQSKLEDKQRGLVRRFLNRNQWILEDFYEIRDYILSE*
Ga0102939_1144431Ga0102939_11444311F066527MTNRFYHEDLLDEFGDDLERIFGPIEERTRGLTSLAGQPDGDLKALIKGLKTKVIDCSGFMPKRQPFLNVVKEVLRVMRDSIDPATGKSIFYGYNLPYFITEERVQGVEEFAWDEIYIDYNVQRNIDVAHIIKDILVEWDTKLCDPAHCRMQSDNSLDVNDSQHATCARALVGAAVCPATYIVSDAKSD
Ga0102939_1155155Ga0102939_11551552F038111MIHRVPVVNKNNYTIWLENYRHIANFIHAEVYKYNKTTREEFGKDLDKLMDLHQNPLYVLTESDNKKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV*
Ga0102939_1172339Ga0102939_11723391F009454AILEVQQPRSRFQLERFVIGQHKTEEMQFYQTCIELQDMIYKYQSAKLNVQKQELKIKRLRETGDELKELKAQELELGLKQTYTAMQGAEREMLALTEIFYSFPKRYTREEIEAAQPSYWDERLTGNGKAQLMGGSGVNPAHIEAMEQAGVLDKLIEEVQESKRELGL*
Ga0102939_1176123Ga0102939_11761231F062489AIVIREEVTAGPTRRYVYHPLAAGGYERKTQLWRQATDGWHTTGTEVVESLAIDCPGGER
Ga0102939_1176183Ga0102939_11761831F089940MKYAAAFFIVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFAAQIDTDD*
Ga0102939_1180665Ga0102939_11806652F098765VELQVRAGLRVRDGDGVVARASATDTAPLAVTQQIDPAAHGGVGGTGGVTIETG*
Ga0102939_1187763Ga0102939_11877632F079661MSDTTIQIPESVRDELKDERLPHESNYGETIERLLGDSTGGQLWTEHELKDLIDHRIQFHRR*
Ga0102939_1196841Ga0102939_11968412F038111MIPSKVPVVNNPDYTIWLENYRNIATFIHADVYKYNKSVRQEFGEDLDKLLRLHNFPLYVLTNKDNTKLKKFMSIYGLVLDHTPLCDDGVEREVYRLDRRV*
Ga0102939_1201698Ga0102939_12016981F018646MLKRENLPPFKKLPYNFDVEKIQEVLRQMPHVDDLKVKNGYGDKVGGKSSKLQKAFGLKFNTIEDAYEWLQKNDVAESELSKGLNGKRMAWDFRNYVKPFENYIQKDDEGKYEVNGSPYKQIALTEYNPESENRVYDKKIPKSRLDERH
Ga0102939_1209449Ga0102939_12094492F062489MPGPDAIVIRERRAEGPTRRYVYHPLAAGGYERTEELWREAKDGWHTTGTEVVAALAIEHPGDGSLTIGTE*
Ga0102939_1209452Ga0102939_12094521F099972TMPKAINGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEMMKALEALSTEAKEDLERHLNDL*
Ga0102939_1217424Ga0102939_12174242F098766MTHPRCAICGYEAHGDDYVRVEVERVPPEKPPETYYFHTRCFDRTQAWERDL
Ga0102939_1219461Ga0102939_12194611F083454MSDKTTIGLKISHERNARIERKVDDENYSSRQAYIRELIDDDLGGFDTTVESTTTEHTPDDRRDAEIYEALLDSIPLKGWTRYDRFKG
Ga0102939_1223418Ga0102939_12234182F072017MSLNQTPSLDSQSDTDIKSTVHKHDAIHRLTQEHIDVLTADDRLLDFYEWQQVIRSSETTVRRLAYSEIEEGVEQ*

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