NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007654

3300007654: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765094712 reassembly



Overview

Basic Information
IMG/M Taxon OID3300007654 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052751 | Ga0105017
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 765094712 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size147882798
Sequencing Scaffolds23
Novel Protein Genes26
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030786Metagenome184N
F042387Metagenome158N
F043990Metagenome155N
F049707Metagenome146N
F054109Metagenome140N
F054111Metagenome140N
F061927Metagenome131N
F063777Metagenome129N
F063778Metagenome129Y
F064818Metagenome128N
F080165Metagenome115N
F085821Metagenome111N
F089056Metagenome109N
F092231Metagenome107Y
F095631Metagenome105N
F095632Metagenome105N
F097490Metagenome104N
F101358Metagenome102Y
F101359Metagenome102N
F101360Metagenome102N
F103431Metagenome101N
F103434Metagenome101N
F105378Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0105017_100007Not Available244669Open in IMG/M
Ga0105017_100008All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales240161Open in IMG/M
Ga0105017_100013All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales220348Open in IMG/M
Ga0105017_100268All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes43889Open in IMG/M
Ga0105017_100269All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes43820Open in IMG/M
Ga0105017_100270All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes43796Open in IMG/M
Ga0105017_100546All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces27468Open in IMG/M
Ga0105017_102167All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium9510Open in IMG/M
Ga0105017_102277All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes9164Open in IMG/M
Ga0105017_102421All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis8717Open in IMG/M
Ga0105017_104731All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes4828Open in IMG/M
Ga0105017_104740All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga4823Open in IMG/M
Ga0105017_105098All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium4510Open in IMG/M
Ga0105017_105487All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica4223Open in IMG/M
Ga0105017_105566All Organisms → cellular organisms → Bacteria4164Open in IMG/M
Ga0105017_106001All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3872Open in IMG/M
Ga0105017_106187All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces3765Open in IMG/M
Ga0105017_108233All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae2861Open in IMG/M
Ga0105017_110402All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium2303Open in IMG/M
Ga0105017_110413All Organisms → cellular organisms → Bacteria2301Open in IMG/M
Ga0105017_126660All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium955Open in IMG/M
Ga0105017_141138All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris640Open in IMG/M
Ga0105017_150628All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria512Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0105017_100007Ga0105017_10000739F054109MIKEKINMTGRPRSKKGVKVHTAFKIYPKDKERAQAMAEKLDISLSSYINKAVLEKLAHDEKSEA*
Ga0105017_100008Ga0105017_100008117F095631MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSQIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTVYFRVNSTNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMNTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAAADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQNFINELEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTEDNKLDINIIIA*
Ga0105017_100013Ga0105017_10001393F105378MNINVYVNNIKKWVQISSDEVLDRNKNLSDLKDKNAAIINLGLYDKFISKEALESGFLPDIFTPENIVTDSNHQFVTDTEKNKWNNKLNKPIANQDHLEENQIGYDELNEKFYIGLNNKNVLIGGASELDNVKVVNGFFSGNSQATVIRNTKQNQNGEFIRPMFVDVQCTEYTGGDLGEISVTYTAEAINVYNTGSFTGSFQCMIVYPLGSANR*
Ga0105017_100268Ga0105017_1002683F103434VVGFRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR*
Ga0105017_100268Ga0105017_10026831F101360VSKENALRKAAIAAHITKVASQEKKKALKELEEYMAPGDTSKPMIDGMQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVATAALDGFIKQTGEVPDGVEVVQGDPRISVRISTVQEEAIRELISTGDISLIEIEGGDA*
Ga0105017_100269Ga0105017_10026912F095632MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSIKTPQTN*
Ga0105017_100269Ga0105017_10026948F049707VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGIMTFSAREWEQKDDVNHLTTIWMRPSLYDIERKEN*
Ga0105017_100270Ga0105017_1002703F103434MVGFRPRRGRYLENGPHVVEVTLAVIKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTEAK*
Ga0105017_100270Ga0105017_10027034F101360VSKKSAARRAAIAAHIAKVASQEKKNALKELEEYMEPGDTTKPQVDGLQVGTVSVSAPQPRYQVVDEKALVTWLEWNKPDAVHKVPAPWFVSAAALDGFIKQTGEVPDGVEVVQGDPRISVRISAAQEESIRELISTGDISLLEIEGGDV*
Ga0105017_100546Ga0105017_10054615F063778MPETISEGAQQQLLRQLQDALGLVADADTSAQDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQTSINDAMGNIEAIPLDPPPED*
Ga0105017_102167Ga0105017_10216713F061927MKKSIFILSVMFILGACSSDSAQKATEKIKNTYSEGLRKTFIKEGIKSCIENSGLKESEAREYCKCAMNKLNESLSNDEIVDISMDNSPKDLDDRIEKAISSCIGE*
Ga0105017_102277Ga0105017_1022772F080165MKNKKFLLAILLSLTACNNKTKTISTLDLEKVVINYKDLPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEKDSLQYTFTRYILR*
Ga0105017_102421Ga0105017_1024215F101358MTEKYSASHGAENQASPPLPRQPEHLLTQPITTDGTPKERATHPDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDTEIIDKGGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGMMIKDGRLQPVADTTHATTSSQEQQTEVLPAQSDNTYDHLGGDSARQLVGSVAAKASDGEVDNSLLVERVLGRAE*
Ga0105017_104731Ga0105017_1047317F030786MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0105017_104740Ga0105017_1047404F085821MDHIFEQLAPLAETKKQQTTVSKFIEKGFKFTRQPDAQKFTFLVYDFFIAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDTSTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANINKTLSIIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRALLCTAETTESQQELVAEIQSHIALLKDLYKKVNKIK*
Ga0105017_105098Ga0105017_1050982F043990MIKKLGIIFTFGVIILGIVVYANHKIERSWIEGEFGVNMSNMNIDEKYREEEWVPNGDGEKTIILTYDQLDSSFTKSNKLPIKEDLPPNGIPKQFLNNTNGYYKYIGDENDDWNFGILIVDTTRKEIWNNNPNIIYLL*
Ga0105017_105487Ga0105017_1054873F092231MIIFPPQEFITWTNRLIQFPWPIQLNDFPAYAEQLGWKPTSRPTWFNVLPDNDDEITMISSDREGNVHNLFLYMASNEAEDAEGAAELNDHFVSCVAAGREAWGEPFLLEAGGGPGVTWRFPGDMFTQVTSGRWSVLFNFFTPEGRRQFL*
Ga0105017_105566Ga0105017_1055663F064818MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0105017_106001Ga0105017_1060014F054111MVFKNLEKASMDKPLDNITHEVFLKLMEHLKNLQEFTFLEYIIAPEADIFYFNFMKKTVKIKWGLDYGLSLETKALYTSDKDLFLNILHKEILSLENQ*
Ga0105017_106187Ga0105017_1061874F063778MPETISEEAKQQLLRQLQDALGLVKNADTSAHDVAAITHSAADGHQLTEVMLQQVTAIEAYLKNCQVSINDAIGNIEAIPLDPPLED*
Ga0105017_108233Ga0105017_1082333F101359MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSAVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQRQSFTDSYKETVK*
Ga0105017_110402Ga0105017_1104024F097490MNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPVVSIMTKYLQHIGGEMIEGQIHHKKIDNIVCSVYIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNLFSNSKENKKMYFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0105017_110413Ga0105017_1104133F063777LKVLNIKISALPPENNSFWMKLLLYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNRLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEIIISE*
Ga0105017_126660Ga0105017_1266602F042387IAENNKVISKRFEYQNDNELKEIIDEGSGERVVFVYEKDFITSKIRYSQSGEELGKTNYQYNNGKLSSVIDEAVISDSGIQYKKVITREYSYNSSEVSVNENVKYHSESYAYNLKDENFTHTYVLNGENIIKIHHEISKNVPSGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSVLAVEFCGLDKDENTIADYLNFRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVTTMVYEYNK*
Ga0105017_141138Ga0105017_1411381F089056MNVFCKIILPLLCIISCSKRKEADNTKTLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSVLLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ*
Ga0105017_150628Ga0105017_1506281F103431MIDLDALIVGMLFFIQLFLQSIAWRVAIAHFLHAERGNAAAAAFDGALRENIADCHAEDDNDKDAESQKEGFHVCIPEG*
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