Sample 3300007660

Overview

Basic Information
IMG/M Taxon OID	3300007660 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052772 \| Ga0105538
Sample Name	Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159915365 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	33320797
Sequencing Scaffolds	5
Novel Protein Genes	5
Associated Families	5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → Viruses → Predicted Viral	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F047508	Metagenome	149	N
F053092	Metagenome	141	N
F077405	Metagenome	117	N
F077781	Metagenome / Metatranscriptome	117	N
F084342	Metagenome	112	N

Family

Category

Number of Sequences

3D Structure?

F047508

Metagenome

149

F053092

Metagenome

141

F077405

Metagenome

117

F077781

Metagenome / Metatranscriptome

117

F084342

Metagenome

112

Scaffold	Taxonomy	Length	IMG/M Link
Ga0105538_100129	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	13799	Open in IMG/M
Ga0105538_101805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	2162	Open in IMG/M
Ga0105538_101838	All Organisms → Viruses → Predicted Viral	2129	Open in IMG/M
Ga0105538_103337	Not Available	1433	Open in IMG/M
Ga0105538_111095	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	674	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0105538_100129

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279

13799

Open in IMG/M

Ga0105538_101805

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae

2162

Open in IMG/M

Ga0105538_101838

All Organisms → Viruses → Predicted Viral

2129

Open in IMG/M

Ga0105538_103337

Not Available

1433

Open in IMG/M

Ga0105538_111095

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan

674

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0105538_100129	Ga0105538_1001298	F084342	VSGQCGAKLFLLGGYLAIPICRPFFAKALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0105538_101805	Ga0105538_1018054	F077405	LLVAKQRGVFYGFISLCQIKFVKKVFDWLKIIQK*
Ga0105538_101838	Ga0105538_1018381	F053092	CRCLSPRLLVRGALILEPAEMEDTMDDHAVQLFGVLGAKELSITTHRIKTDEHVPRDHIPITLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0105538_103337	Ga0105538_1033371	F047508	VVELIGEPVHIGMLGHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAMTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGATTVEDQDFHKVLYYMVRCELILSSP*
Ga0105538_111095	Ga0105538_1110951	F077781	LRPTFCSATGTPPPIAAPARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*

Scaffold ID

Protein ID

Family

Sequence

Ga0105538_100129

Ga0105538_1001298

F084342

VSGQCGAKLFLLGGYLAIPICRPFFAKALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE*

Ga0105538_101805

Ga0105538_1018054

F077405

LLVAKQRGVFYGFISLCQIKFVKKVFDWLKIIQK*

Ga0105538_101838

Ga0105538_1018381

F053092

CRCLSPRLLVRGALILEPAEMEDTMDDHAVQLFGVLGAKELSITTHRIKTDEHVPRDHIPITLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*

Ga0105538_103337

Ga0105538_1033371

F047508

VVELIGEPVHIGMLGHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAMTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGATTVEDQDFHKVLYYMVRCELILSSP*

Ga0105538_111095

Ga0105538_1110951

F077781

LRPTFCSATGTPPPIAAPARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007660: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159915365 reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences