NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007724

3300007724: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763961826 reassembly



Overview

Basic Information
IMG/M Taxon OID3300007724 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052838 | Ga0105680
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 763961826 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size126660697
Sequencing Scaffolds10
Novel Protein Genes12
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 4732
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032313Metagenome180N
F036281Metagenome170N
F043990Metagenome155N
F080164Metagenome115N
F085820Metagenome111N
F089055Metagenome109Y
F092230Metagenome107N
F097527Metagenome104N
F103432Metagenome101N
F103433Metagenome101N
F103436Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0105680_100163All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis49966Open in IMG/M
Ga0105680_100195All Organisms → cellular organisms → Bacteria45303Open in IMG/M
Ga0105680_100636All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 47324099Open in IMG/M
Ga0105680_101067All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 47317067Open in IMG/M
Ga0105680_101453All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes13734Open in IMG/M
Ga0105680_105362All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp.4704Open in IMG/M
Ga0105680_106874All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus3626Open in IMG/M
Ga0105680_115790All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1376Open in IMG/M
Ga0105680_120436All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1000Open in IMG/M
Ga0105680_125773All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes765Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0105680_100163Ga0105680_10016338F089055LKVEKMNSTPECVTKTPEIEAREKLAAIFSDAERCDNSKVNPELGKTAIDIENTSRMNSADDGAVYLCNQALGSYEKSLDHINNGPLETVQTIGISLQRLREYKTERSCR*
Ga0105680_100195Ga0105680_10019520F103433MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWSGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARAIAGLSPDDASKIPAYIKRASIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLSFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINKIVNLDNMANNGGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYILIGLWADYVVKRTVKYE*
Ga0105680_100636Ga0105680_1006361F080164MVGLTLCAAPQVTLRERANAFPLITEKDESEIDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKSMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPILYKGQEGRLVLCEYYESHRGDLFLDVANAHPEIFGELRPVVDFHFSVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRP*
Ga0105680_100636Ga0105680_1006362F103432MKLIHSLFSLPLLLVLGGFLCFTACQDDAEPARAAWLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSLRVVAVGDTIYRQKESDAQFNADLDALFHESIGIAPRLFGVRELSVLGIDRKGKPRDLGNYSCPLLQGKRKNVNYRTREGVFHEHYEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVAEVPLY*
Ga0105680_101067Ga0105680_1010672F032313MYRFLILLFALTLMACDNDTPQEKPREQEKHEVPVPVPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLISVFGMLTSKIPKQRFDSLFKQTVWEVKDIRVVETDLSLAKKNPGILGWVTTTEFTCRNGVILLHWQGIDVNHVDTVNYVYDEVDNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK*
Ga0105680_101067Ga0105680_1010673F032313MYRFLILIFALTLMACDNNTPQEKPHEQEKHEVPVPKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSIAKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKNAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEEK*
Ga0105680_101453Ga0105680_10145313F092230MRQAHKRTVDKLKAYLLKVFFPLFIVCIILVAFFRQIGCGSEGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNIVRVDGIRCLYAVNQNEDGLSIYLLLPEGTYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVQSTEEKEARDKVDDAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYFSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGLLVIILPPCMLFLLIV*
Ga0105680_105362Ga0105680_1053621F085820MRSTFYLFAMLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVANECHFHRTWLTQGVKAIRVVRTHADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPAGLKQRIVLRLADGTEIEKELSDKRKK*
Ga0105680_106874Ga0105680_1068743F103436MIITSKDGWCDKSDAEILNSLRDWVLKCDLKYSKREALKKIDSAFALWGNAEYVAAVHLLDENEVYFSKEDWPYYALGIEILKARKYTYFY*
Ga0105680_115790Ga0105680_1157903F097527MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAAGVEPARPCGHWILSSMNTF
Ga0105680_120436Ga0105680_1204362F043990MIKKLGIIFTFGVIILGIAVYANHKIESSAIEREFGVNMSNMNIDEKYRKEEWALNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNTTNGYYKYVVDENDDRDFGILIVDTTRKEICIYYQIL*
Ga0105680_125773Ga0105680_1257732F036281MITLIKVDEGPVDIHELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYSYKEYFDYWTAREGRPAPFFYESRQYHVKSFMRVPGMPELLITAEREKDHWYTFRLSDGLKS
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