NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007794

3300007794: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159571453 reassembly



Overview

Basic Information
IMG/M Taxon OID3300007794 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052869 | Ga0105809
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 159571453 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size127060213
Sequencing Scaffolds12
Novel Protein Genes16
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4162
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F033081Metagenome178Y
F036281Metagenome170N
F046432Metagenome151Y
F051211Metagenome144N
F051213Metagenome144N
F051214Metagenome144N
F063778Metagenome129Y
F071329Metagenome122N
F074985Metagenome119N
F092232Metagenome107N
F095631Metagenome105N
F097527Metagenome104N
F101358Metagenome102Y
F103434Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0105809_1000010All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA41692716Open in IMG/M
Ga0105809_1000169All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes30724Open in IMG/M
Ga0105809_1000447All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA41618195Open in IMG/M
Ga0105809_1000907All Organisms → cellular organisms → Bacteria11894Open in IMG/M
Ga0105809_1001865All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes7527Open in IMG/M
Ga0105809_1001991All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis7186Open in IMG/M
Ga0105809_1005359All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus3485Open in IMG/M
Ga0105809_1007778All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces2636Open in IMG/M
Ga0105809_1014805All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1583Open in IMG/M
Ga0105809_1037638All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes720Open in IMG/M
Ga0105809_1046483All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium596Open in IMG/M
Ga0105809_1050188All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria554Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0105809_1000010Ga0105809_100001070F095631MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAAADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEEKIQNFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTDDNKLDISIIIA*
Ga0105809_1000169Ga0105809_100016917F103434MVGHRPRRGRFLEDGPHAVEVTVAVIKEGRTGRRYERGETFYVDKVLVQPSAGNALKATENRDIRGDLTDETTLKVMGTGRKWPGGPHSWVKVLRGPASLEGKTFQQAGEPLTYDASPMTRHWAVRCDTLGAAAK*
Ga0105809_1000447Ga0105809_10004479F092232MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGSQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGEIFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHIIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVAAFIISINKYATKKFTLDNIYNTDFWICKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTDEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRNPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED*
Ga0105809_1000907Ga0105809_100090711F051211MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLHIYQPHSLHERILSQLRSKLFRGNPKEFYIAIDKWLADTRAHHSS*
Ga0105809_1001865Ga0105809_100186510F051214MPGKIVTHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0105809_1001865Ga0105809_100186512F018385METMMADLINSWLPYQELSIEKDRDPVTDDEIIYGSNVKHFTLTVYSPEGRVNKYWNARILKDQVGYCRVACPREKKILCFNWVNWTAYMFSHDGLNELVFMPDARRRTVSQLSFDHVSMKEVK*
Ga0105809_1001865Ga0105809_10018654F074985VELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGNTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMTLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID*
Ga0105809_1001865Ga0105809_10018655F036281VITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNADGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRIPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEQGHQTYDWVLKNVEWAADTIRYF*
Ga0105809_1001865Ga0105809_10018656F027205VASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSAK*
Ga0105809_1001991Ga0105809_10019911F033081RKGVMAWLFRRAMPRDTRPTFVWPNLARAIGDARYFDQRWLTAIATVLIIVTIATIKVLLMIPGLDSSVVELLTSIFETFLPARWATGAAWVAGAVGVFLIGDFTNYTKKQKSLHGLKATGCGVYDTLLLFALLEEQAFRSGSEKWSWRERARASVCFGLLHITNIWYSLAAGVALSATGFGFLLVYLWYYRKYRSQVVATAAATTLHTLYNVIALSLIAVAAVAYLVINIAKML*
Ga0105809_1005359Ga0105809_10053591F097527MIYFKMEKIGNSTYNKEKKTRSENLVFITIPAAGGEPARPCG
Ga0105809_1007778Ga0105809_10077783F063778QQQLLQQLQEALGLVADADTSAHDVAAITHSAAAGHQLTEVMLQELTTAREHLKSCANQIEHAISNVKAIPLDPPPED*
Ga0105809_1014805Ga0105809_10148052F051213MGSYELSAGGDLSGGYTYTCRRKPFVRRIAMHRYSCLAKQIHPMNLYKILGALILALSFVFTSCDWVGNEPTIEGDIDKYFDSNAQRKSFRVVNASGKRYNHKVDWHIVGITQLGLKTYLTEKVDTLSNGDLKISYDWVSFTVKENKSVIEVEVQKNETGQARSVLFATRNDDKQAHLPDMIVTQGAK*
Ga0105809_1037638Ga0105809_10376381F071329PLYSKGTLMLPVAKIVLSGLTSIGAGMIASKLTKPLVSNASGIAKILLWFGSVGTGLAASAIVAREVEKQFDETVKAVKEARDHIEIED*
Ga0105809_1046483Ga0105809_10464831F101358MTEKYSASLPPRQPEHLLTQPITTDGMPQERATHPDTHSIPKRQDVPLHQWNVLRSSGQLDEGWIDREIIDKDGTMLVRMTKLVHRSNIDRLEKCVPLAVLQEQNIDFTNAYLQKAYGVTMEDGKLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKA
Ga0105809_1050188Ga0105809_10501881F046432MQMTENELSEVISKFQMPEGRYSIEQEGSFGRGEFFWIIKNQSTNQRYLLMNTYSHHGVESELECYREEGFDNLEAIPRRIETLEVVSDAEDEIFKYLFGFYSIFEMKS*
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