NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007795

3300007795: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158458797 reassembly



Overview

Basic Information
IMG/M Taxon OID3300007795 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052805 | Ga0105644
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 158458797 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size74647771
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1
Not Available2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054110Metagenome140N
F066860Metagenome126N
F076191Metagenome118N
F078842Metagenome116N
F089055Metagenome109Y
F103436Metagenome101Y
F105376Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0105644_100284All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis28969Open in IMG/M
Ga0105644_103130All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus3990Open in IMG/M
Ga0105644_103986Not Available3164Open in IMG/M
Ga0105644_104560All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis2772Open in IMG/M
Ga0105644_106673All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1920Open in IMG/M
Ga0105644_109013Not Available1404Open in IMG/M
Ga0105644_113154All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria951Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0105644_100284Ga0105644_10028433F054110VFNVNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGD*
Ga0105644_103130Ga0105644_1031305F103436MTTSKDGWCDDKSDAEILENLKDWVSKCDVSYKREALKKIDSAFALWGNDEYVSAVRLLDENEVFLKKSDWPYYALGIEILKARKHEFFNE*
Ga0105644_103986Ga0105644_1039865F105376VVVFLWGKIMNEKPEVSAKEFGALGADVIHIKESVDRHTVTLERIENIARANVTQAQLKAYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTVRRK*
Ga0105644_104560Ga0105644_1045602F078842MIISSIYKIADNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEVKKTYDEALREFDKLVISEDDILRAASECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGSLKKDDKIINQLSYDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMANSARIRQMINSIELDVYEVNS*
Ga0105644_106673Ga0105644_1066732F066860MTTKKQKLQKQQAIDTWIVIALWVSAIWFSFARGFIPGIGGWVLALLAPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAEDKE*
Ga0105644_109013Ga0105644_1090131F076191IKALSDELVNQDNRSTSMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIEENGHHYDNPTTCVRSAHDNRELKDIVHLLILAGGNEIPSNHYGVLRDA*
Ga0105644_113154Ga0105644_1131542F089055LKVEKMNSTPECVTKTPEIEAREKLAAIFSDTEQRDNSKVNPELGKTAIDIENTSRMNSADNGAVDFCNQALGSYEKSLYHINNGPLETVQTIGISLQRLREYKTEGSCR*
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