NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007828

3300007828: Human attached/keratinized gingiva microbial communities from NIH, USA - visit 2, subject 763961826 reassembly



Overview

Basic Information
IMG/M Taxon OID3300007828 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052900 | Ga0105961
Sample NameHuman attached/keratinized gingiva microbial communities from NIH, USA - visit 2, subject 763961826 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size42446760
Sequencing Scaffolds10
Novel Protein Genes12
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2791
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Attached/Keratinized Gingiva → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F043235Metagenome156N
F045567Metagenome152N
F053092Metagenome141N
F070224Metagenome123N
F071329Metagenome122N
F081456Metagenome114N
F084342Metagenome112N
F090517Metagenome108N
F101358Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0105961_100449All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes6998Open in IMG/M
Ga0105961_101270All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria3247Open in IMG/M
Ga0105961_101379All Organisms → cellular organisms → Bacteria3093Open in IMG/M
Ga0105961_101704All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.2676Open in IMG/M
Ga0105961_101808All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas2574Open in IMG/M
Ga0105961_102081All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2364Open in IMG/M
Ga0105961_102889All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.1878Open in IMG/M
Ga0105961_103662All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2791595Open in IMG/M
Ga0105961_114294Not Available652Open in IMG/M
Ga0105961_115299All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae624Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0105961_100449Ga0105961_10044911F071329MRPLYSKGILMLPVAKIIISGLSSIGAGMIASRLTKPIVSNSNGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEASTHIEIED*
Ga0105961_100449Ga0105961_10044912F018385MMAEHVNRWDPYAEVPIETHRDPVKDDQLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNDLVFMPDSGRKIITQLFEKEVK*
Ga0105961_100449Ga0105961_1004496F027205VASRLIVSADDILRAVKESEEFERKALVEAQKRDRAAGKKPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0105961_101270Ga0105961_1012702F101358MTEKYSASLPPRQEHLLTQPITTDGTPQERATHPDTHSIPKRDDVPQYLWNVLRSSGQLDEGWIDTEIIDENGVVLVRMTKPVHRSNIDKLEKCVPLAVLQEQNLDFTNAYLQKAYGVMIKDGRLQPAADTTHATTSSQEHQTEVLPAQGGDTHEHRSGDSARQLVGSVAAKASDTEVDNSLLVERALKR*
Ga0105961_101379Ga0105961_1013792F101358MTEKYSASLPPRQPEHLLTQPITTDGMPQERTTHPDTHIIPKRQDVPRYQWNVLRSSGQLDEGWIDTEIIDENDVALVRMTKPVHRSNIDKLEKCVPLAVLQEQNIDFTNAYLQKAYGVMIKDGRLQPVADTTHATTSSQEQQTEVLLAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSPLVERVLGHVE*
Ga0105961_101704Ga0105961_1017042F043235MDEVVPSDKGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIYRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGETAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0105961_101808Ga0105961_1018082F090517LGLLFLASSCKNKKDTPRLEFSSVELRQTVWNGTLEYKNAKRGSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQANAGNPDREATLTLRKKL*
Ga0105961_102081Ga0105961_1020814F081456LGYRLFLEKGAHMFEEPPIYYVLISLIFLIVFFAISFATWLVWLTNVAFFVKLVITAIGALFAAMTVILYTISAE*
Ga0105961_102889Ga0105961_1028892F045567MVTEDVVHTGTHRVEDALLPIDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTGIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSESGCVVERVVR*
Ga0105961_103662Ga0105961_1036622F053092MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHAVQLFGVLGAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0105961_114294Ga0105961_1142941F070224FLLLPPPHCTAWSQGYNAPDSIYVATGAVYIPPISGEPIYLLASPLKSGHTPGHKLRTRDWVKVDYSDRNNIIIMGFGDSLVIENLFIYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFSRMPTALREIKKYKLPRTRRSSGEVNRWQHLHLFVVEHDKKADRYYKYRIALVIYMDYDHPEACIIH*
Ga0105961_115299Ga0105961_1152991F084342EGRRGGGGKRFLLGGYLAVPIRRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWIHQRHILGICKEE*
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