NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300007885

3300007885: Spring water viral communities from Black Pool hot spring in the West Thumb Geyser Basin, Yellowstone National Park, WY, USA



Overview

Basic Information
IMG/M Taxon OID3300007885 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118208 | Gp0131447 | Ga0111098
Sample NameSpring water viral communities from Black Pool hot spring in the West Thumb Geyser Basin, Yellowstone National Park, WY, USA
Sequencing StatusPermanent Draft
Sequencing CenterRoche Applied Science
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size2424289
Sequencing Scaffolds19
Novel Protein Genes20
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia1
Not Available8
All Organisms → Viruses → unclassified bacterial viruses → Cyanophage cp-OS4
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX2533
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 11

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSpring Water Viral Communities From Black Pool Hot Spring In The West Thumb Geyser Basin, Yellowstone National Park, Wy, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Planktonic → Spring Water Viral Communities From Black Pool Hot Spring In The West Thumb Geyser Basin, Yellowstone National Park, Wy, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationYellowstone National Park
CoordinatesLat. (o)44.41822Long. (o)-110.57182Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003460Metagenome / Metatranscriptome485Y
F015070Metagenome / Metatranscriptome257Y
F040513Metagenome / Metatranscriptome161Y
F041593Metagenome / Metatranscriptome159Y
F069691Metagenome / Metatranscriptome123N
F072057Metagenome / Metatranscriptome121Y
F076662Metagenome / Metatranscriptome118Y
F077497Metagenome / Metatranscriptome117Y
F084271Metagenome / Metatranscriptome112Y
F104050Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0111098_10036All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli4367Open in IMG/M
Ga0111098_10053All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia3816Open in IMG/M
Ga0111098_10125Not Available2398Open in IMG/M
Ga0111098_10242Not Available1819Open in IMG/M
Ga0111098_10341All Organisms → Viruses → unclassified bacterial viruses → Cyanophage cp-OS1920Open in IMG/M
Ga0111098_10356All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX2531572Open in IMG/M
Ga0111098_10393All Organisms → Viruses → unclassified bacterial viruses → Cyanophage cp-OS1648Open in IMG/M
Ga0111098_10394Not Available1484Open in IMG/M
Ga0111098_10406Not Available1544Open in IMG/M
Ga0111098_10416All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX2531438Open in IMG/M
Ga0111098_10489All Organisms → Viruses → unclassified bacterial viruses → Cyanophage cp-OS1529Open in IMG/M
Ga0111098_10645Not Available1186Open in IMG/M
Ga0111098_10668All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX2531193Open in IMG/M
Ga0111098_10796All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli996Open in IMG/M
Ga0111098_10839Not Available1100Open in IMG/M
Ga0111098_11075Not Available1010Open in IMG/M
Ga0111098_11203All Organisms → Viruses → unclassified bacterial viruses → Cyanophage cp-OS741Open in IMG/M
Ga0111098_11558All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1584Open in IMG/M
Ga0111098_11956Not Available741Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111098_10036Ga0111098_100362F072057MGGKGQIGQNGSNGNGQADMFCRTVIAAVAAMLALRLCQYLRRLLQG*
Ga0111098_10053Ga0111098_100538F040513MHALLSFLDYLVSELEYSYYLKKADSLCDYLDYLDAVVSLNEIRASEEYRMLCK*
Ga0111098_10125Ga0111098_101252F084271MIRKGKAETVRVMGIKWVWNYTQRKWIGKSAMGEWSLWYDGTRWNLQSPNSAIYTFLRQHRYEAMVQAGYTIASVERYMAGR*
Ga0111098_10242Ga0111098_102422F041593MTSKNLHNELYKLAIAMAKYNGKGVKQNLDYLLSQEQERNKDNSDCIQQSLPMH*
Ga0111098_10341Ga0111098_103411F069691MTGSPPSNLTVEQILAWSLLALHTQGSSQTVQEGGETLPRFSYALAPNAIILRANLPLQAGWPGATSPLWTRVAEAVQGGLPQGF*
Ga0111098_10356Ga0111098_103564F003460MPKARIDERYFHDLEHAFEVLHEVLSPRGLYADVGMMFVVNLRRASELRDISIELVIRSRSGGSPVWFAKESLRVPGRMKLRSVASVLFGLMMRAAYDVEAQISLPGDERQSDQGRARILPRK*
Ga0111098_10393Ga0111098_103932F069691MNGSPPSNLTVEQTLVWALLALHTNGSAQTVQEGGRDSPPSFLMHWPPNAIILRANLPLQAGWPGATSPLWTRVAEAVQGGLPQGF*
Ga0111098_10394Ga0111098_103942F084271MDRKGKADTVRVMGIKWIWNYKARKWEGGSTVGMWSLWYDGNRWQLQSPNGTIYTFLKQHRYEAMVQAGYTIASVERYLAGR*
Ga0111098_10406Ga0111098_104065F104050MTSCERKCIIRLRKYCVVHANLTEEEQEKYGTRDYVVTYCSMCIKALYAKAKMRLVKFSVVNTL*
Ga0111098_10416Ga0111098_104162F003460MPRASRDERYFHDLQHAYEALHEVLMPRGLYADVGMMLVVNLRRSSELRDVSIELVIRSRSGGSPVWRASEGLKIPGRMKMRSVSSALFGLMMRAAYDIEAQISLPGDDHPRPWIVTYLPLDEGPGARASARRAGRARKLAQTARCSYNVT*
Ga0111098_10489Ga0111098_104892F069691MTGSPPSNLTVEQILAWALLALHTNGSSQTVQEGGETLPRFSYALAPNAIILRANLPLQQGWPGAASPLWTRVGEAVQGGLPTGF*
Ga0111098_10645Ga0111098_106451F003460MPKASRDERYFHDLQHAYEVLNEVLSPRGLYAETALLLVASLRRPGELRDVSIELVIRARAGGSPVWRAVESLRIPGRMKLRSVASVLFGLMMRATYDIEAQISLPGDDAPGPSGRARILPRS*
Ga0111098_10668Ga0111098_106683F076662MPKASRDERYVHDLQHAYEMLHDVLAPRGLYAESSLLLVVNLRRPAELRDVAVELVIR
Ga0111098_10796Ga0111098_107961F072057MVGRIGPGSDAKNGQGDTFCRTVIAALAAMLALKLCEYIRKW
Ga0111098_10839Ga0111098_108391F041593MTSKNLHNELYKLAIAMAKYNGKGVKQNLDYLLSQEQERNKDNSDCIQQSLP
Ga0111098_10839Ga0111098_108393F015070MEKLMETGFIGVADYITRQESWVSPDWKALNKEFFTVVVDNLLDFLWDYYMPL*
Ga0111098_11075Ga0111098_110752F040513VDALLTFLDFLVAELEYHYLLKRADSLCDYLDYLNAVISLNEIRASEEYRKLQ*
Ga0111098_11203Ga0111098_112032F069691MIGTPPSNLTVEQTLAWALLALHTNGSSQTVQEGGEVLPRFSYALAPNAIIVRANLPLQQGWPGATGPLWTRVGEAVQGGLPTGF*
Ga0111098_11558Ga0111098_115582F077497MDKEQINKLEEILERHLFGEVDNTDYELKRMQVIILYLIYQKLKNIDEKLNAIDQSLFEMANPGLFE*
Ga0111098_11956Ga0111098_119562F040513LDYLVAELEYHYYLKKADSLIDYLDYLDAVVSLNEIRQSPEYRNLR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.