NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007938

3300007938: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 158479027 reassembly



Overview

Basic Information
IMG/M Taxon OID3300007938 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053109 | Ga0114251
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 2, subject 158479027 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size41243635
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2793
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas3
Not Available2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045567Metagenome152N
F047508Metagenome149N
F051213Metagenome144N
F055792Metagenome138N
F081510Metagenome114N
F084342Metagenome112N
F090517Metagenome108N
F094006Metagenome106Y
F099454Metagenome103N
F103436Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114251_100172All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27911129Open in IMG/M
Ga0114251_101042All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus3959Open in IMG/M
Ga0114251_101266All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2793521Open in IMG/M
Ga0114251_101269All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2793516Open in IMG/M
Ga0114251_104602All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1462Open in IMG/M
Ga0114251_109237Not Available875Open in IMG/M
Ga0114251_110236All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas808Open in IMG/M
Ga0114251_110697All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes781Open in IMG/M
Ga0114251_112762All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas684Open in IMG/M
Ga0114251_116286Not Available573Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114251_100172Ga0114251_1001729F051213MKASKLLWAVVMAFTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQKNETGKVRAVYLNTNTSGRHITLPDMRVTQRAK*
Ga0114251_101042Ga0114251_1010423F103436MITTSKDGWCEKSDTEILNSLKDWVSSCDVDFKREALKKIDSAFALWGARQYVSALRLLDENEVFLKKSDWPYYALGIEILRVRKHEFLNE*
Ga0114251_101266Ga0114251_1012662F045567MRQRDGRDTLTEELEGGITPLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEKPHLTEREGAW*
Ga0114251_101269Ga0114251_1012693F055792VEIAGEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAETMVTGALERDLAIDCALEEVRPVFVDESDDGTEAGTTWGRYPLEAFQKEGYILFEGSMLPCEACGVDSRSSVKSLDLEPRIIGEAIEPVALPDVTRLDESIALQGIGSLRDLLMTPDVSETDYLQTSREEGTDLLQLMSIIARKYQLFHTFVS*
Ga0114251_104602Ga0114251_1046022F094006MWSALEPAGPTGALYEPAVCVEAHIGELQTGGIVCRCLFAFGGSNLLAVAELGAEAPHAIDMYDIAICEPLSELFAKELEYAFN
Ga0114251_109237Ga0114251_1092371F090517LGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTLEYKNPKRDSYSVYLNFLSDSEVEVSGYDLKDPTYSRDLQVRYYYTITDRILTLKAQVNRELRPPMDQNTWYLIRKEPSLLVFQANAGNPDLEATLTLRKKL*
Ga0114251_110236Ga0114251_1102361F099454EAGGIPHYRLMRGALEAILQCSQRHLVGTERIYLYLVSKRTYKPKTHSGIKTLMKASKLLWAVVMALTFVFTSCDPFSQNEPTIEGDRYKYFDSSAQRQSFRVVNGSGKPYNHKVDWHIIGIQEENSDTYLTRKVDTLSNGDFIISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK*
Ga0114251_110697Ga0114251_1106971F081510YEGIKSGKKLEATKAKYEQMEADGEEFTRFDVVKDVAKDVALPVAVATASTASIILGFAIQTNRLKAVSAALAMVTEEHARYRLRAKTVLDEETFKKIDAPLETKTVEVDGEEIEVESIVPNQGDFYGMWFKNSYKYASDSPEYNEGVIKEAENVLTEKMMRSGMLTFAEVLDTLGFEVPKAALPFGWTDTDGFYIEWDTHEVWNDNKQEYEVQFYVRWKTPRNLYATTNFKDFIPKKTRKELN*
Ga0114251_112762Ga0114251_1127621F084342PPPPLWGGKGGGAKLFLLGGYLAIPISRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0114251_116286Ga0114251_1162861F047508RNISMACSMEAIATDAVLVIEFVGERVHIGMLGHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATIEDQDFHKVLYY
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