Sample 3300007995

Overview

Basic Information
IMG/M Taxon OID	3300007995 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052936 \| Ga0111049
Sample Name	Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160380657 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	43033307
Sequencing Scaffolds	7
Novel Protein Genes	7
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	2
Not Available	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F020492	Metagenome	223	Y
F027205	Metagenome	195	N
F035626	Metagenome / Metatranscriptome	171	Y
F071329	Metagenome	122	N
F081455	Metagenome	114	N
F097527	Metagenome	104	N
F103436	Metagenome	101	Y

Family

Category

Number of Sequences

3D Structure?

F020492

Metagenome

223

F027205

Metagenome

195

F035626

Metagenome / Metatranscriptome

171

F071329

Metagenome

122

F081455

Metagenome

114

F097527

Metagenome

104

F103436

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0111049_101612	All Organisms → Viruses → Predicted Viral	3022	Open in IMG/M
Ga0111049_104248	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1567	Open in IMG/M
Ga0111049_105126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1375	Open in IMG/M
Ga0111049_110674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	793	Open in IMG/M
Ga0111049_112447	Not Available	707	Open in IMG/M
Ga0111049_117465	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78	545	Open in IMG/M
Ga0111049_119027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	506	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0111049_101612

All Organisms → Viruses → Predicted Viral

3022

Open in IMG/M

Ga0111049_104248

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

1567

Open in IMG/M

Ga0111049_105126

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus

1375

Open in IMG/M

Ga0111049_110674

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus

793

Open in IMG/M

Ga0111049_112447

Not Available

707

Open in IMG/M

Ga0111049_117465

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78

545

Open in IMG/M

Ga0111049_119027

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

506

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0111049_101612	Ga0111049_1016123	F071329	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*
Ga0111049_104248	Ga0111049_1042484	F027205	VASRLIVSADDILKAVKESEAFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSTK*
Ga0111049_105126	Ga0111049_1051261	F097527	MEKIGNSTKTEKKKTRSENLVFITIPAAGVEPARPCGHWILSPAR
Ga0111049_110674	Ga0111049_1106742	F103436	MSNKGWRDKTDSEIFDSLGDWVMKCDLKYSKSDALYKVKLAQCLWGDDKYVEAVHLLDENEVFFEKSDWSYYALGIEILKARKHKFFDE*
Ga0111049_112447	Ga0111049_1124471	F081455	VNESLLELEKDYSPVEEIGMQNVEIIDSAEEAIQQPLANTDSSIAVNFSQMINKPETEEVKTELVSTPDNGEAKVNVVFPKNEHILGNYVDYDSFNKIKESNTDKVVRAVRLLNYKMADQNAAMKFGQFVSEFNSECDPSKRLRYELIRHQGREKDLVVRLSTVINGTTKYYADIYPDLNKIDVDHHLISSARK*
Ga0111049_117465	Ga0111049_1174651	F035626	MASSIHNNAVQGETFLPGQIFVFGGFALRANSLGHLEQIEIYAPGRQVRFGSLNFTADIRGDLILDGFEPQPSVPHYRGEHDLALQPDSTLEAVLETTPIFNSGPAPQIEDGCLDTASGAAISVTIELNTIPVLCKARNS
Ga0111049_119027	Ga0111049_1190271	F020492	MGLQAALLTSVALTAEVGALKQDPERSERELDLAKKQLEDKEGE*

Scaffold ID

Protein ID

Family

Sequence

Ga0111049_101612

Ga0111049_1016123

F071329

MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*

Ga0111049_104248

Ga0111049_1042484

F027205

VASRLIVSADDILKAVKESEAFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSTK*

Ga0111049_105126

Ga0111049_1051261

F097527

MEKIGNSTKTEKKKTRSENLVFITIPAAGVEPARPCGHWILSPAR

Ga0111049_110674

Ga0111049_1106742

F103436

MSNKGWRDKTDSEIFDSLGDWVMKCDLKYSKSDALYKVKLAQCLWGDDKYVEAVHLLDENEVFFEKSDWSYYALGIEILKARKHKFFDE*

Ga0111049_112447

Ga0111049_1124471

F081455

VNESLLELEKDYSPVEEIGMQNVEIIDSAEEAIQQPLANTDSSIAVNFSQMINKPETEEVKTELVSTPDNGEAKVNVVFPKNEHILGNYVDYDSFNKIKESNTDKVVRAVRLLNYKMADQNAAMKFGQFVSEFNSECDPSKRLRYELIRHQGREKDLVVRLSTVINGTTKYYADIYPDLNKIDVDHHLISSARK*

Ga0111049_117465

Ga0111049_1174651

F035626

MASSIHNNAVQGETFLPGQIFVFGGFALRANSLGHLEQIEIYAPGRQVRFGSLNFTADIRGDLILDGFEPQPSVPHYRGEHDLALQPDSTLEAVLETTPIFNSGPAPQIEDGCLDTASGAAISVTIELNTIPVLCKARNS

Ga0111049_119027

Ga0111049_1190271

F020492

MGLQAALLTSVALTAEVGALKQDPERSERELDLAKKQLEDKEGE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007995: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160380657 reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences