Sample 3300007999

Overview

Basic Information
IMG/M Taxon OID	3300007999 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0127791 \| Ga0105163
Sample Name	Hot spring microbial communities from Jinze hot spring, China to study Microbial Dark Matter (Phase II) - JNZ 110809A
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	218561379
Sequencing Scaffolds	12
Novel Protein Genes	12
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	8
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	2
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Baoshan, Yunnan, China
Coordinates	Lat. (^o)	25.4413	Long. (^o)	98.46	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004454	Metagenome / Metatranscriptome	437	Y
F020112	Metagenome	226	Y
F025877	Metagenome	200	Y
F038537	Metagenome	165	Y
F051554	Metagenome	144	Y
F064214	Metagenome	129	Y
F078228	Metagenome	116	Y
F079345	Metagenome / Metatranscriptome	116	Y
F091324	Metagenome / Metatranscriptome	107	Y
F103293	Metagenome	101	Y

Family

Category

Number of Sequences

3D Structure?

F004454

Metagenome / Metatranscriptome

437

F020112

Metagenome

226

F025877

Metagenome

200

F038537

Metagenome

165

F051554

Metagenome

144

F064214

Metagenome

129

F078228

Metagenome

116

F079345

Metagenome / Metatranscriptome

116

F091324

Metagenome / Metatranscriptome

107

F103293

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0105163_1012339	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2443	Open in IMG/M
Ga0105163_1017149	All Organisms → cellular organisms → Archaea	1830	Open in IMG/M
Ga0105163_1017683	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1781	Open in IMG/M
Ga0105163_1023426	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1391	Open in IMG/M
Ga0105163_1024346	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1341	Open in IMG/M
Ga0105163_1026704	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1239	Open in IMG/M
Ga0105163_1030897	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1088	Open in IMG/M
Ga0105163_1032084	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1053	Open in IMG/M
Ga0105163_1038290	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	903	Open in IMG/M
Ga0105163_1048316	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	741	Open in IMG/M
Ga0105163_1066580	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	573	Open in IMG/M
Ga0105163_1073344	Not Available	532	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0105163_1012339

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

2443

Open in IMG/M

Ga0105163_1017149

All Organisms → cellular organisms → Archaea

1830

Open in IMG/M

Ga0105163_1017683

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1781

Open in IMG/M

Ga0105163_1023426

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1391

Open in IMG/M

Ga0105163_1024346

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1341

Open in IMG/M

Ga0105163_1026704

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1239

Open in IMG/M

Ga0105163_1030897

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1088

Open in IMG/M

Ga0105163_1032084

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1053

Open in IMG/M

Ga0105163_1038290

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon

903

Open in IMG/M

Ga0105163_1048316

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon

741

Open in IMG/M

Ga0105163_1066580

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

573

Open in IMG/M

Ga0105163_1073344

Not Available

532

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0105163_1012339	Ga0105163_10123394	F064214	MSEKGDLKVLAKSAEDLAYALRDTLDVLADHERRIKRLEEKLGFLADVESRVVEKAVAGGHVE*
Ga0105163_1017149	Ga0105163_10171492	F079345	MLSKALNLELEGLSVLQRKLLLQLLHRRYPHYWDKFTSHEYTWQSRKEALEEFLQNHQTELVKEFVRAGLHGNGWKTTRRSGARVQG*
Ga0105163_1017683	Ga0105163_10176833	F079345	MLSKALNLELEDLSVLQRKLLLELVHRKHPHYWSKITGHEYSWQSRKEALEEFLQNHQTELVEEFAKSGLHGNGWKTTRKGGIRV*
Ga0105163_1023426	Ga0105163_10234262	F020112	MEKEAPKTRIKGELQMISRAFRKCVELVEEMLGRGYRLQIPSTEVERLIKIGVGADKRTVQKYMRMLTEDLGFLKTAAKNPLGVVIYRIDVEAIEQFVGEHLKDKLRQLKLSDIRLEQNSIEEEVKTEKI*
Ga0105163_1024346	Ga0105163_10243463	F038537	MRRSVYVWRELAPLVLRFCRESGICFNEVVNRAISGFLGSCDVERLRLEARLDVLLREEARLRRVCNAMLRSGSYLPGYVRRVLREPGRSLSHLPDPQRPLKALNPREERVFRRIVARREQIAREIAEIEEQLLQDVKPFRLKPDLHGRSRSRRRLCDKKGLKEVKKPNGETAQDG*
Ga0105163_1026704	Ga0105163_10267042	F025877	MPGLDETENTFRYRVQNPDKFDRFRVKEITHGVKITLGRVKGTSRWEIQNYLFDKKLFRTREQVQKWLEKHLKSEVKTLLDFNAWNEHRKRLLQVYLEISKIA*
Ga0105163_1030897	Ga0105163_10308972	F091324	MSVHLHTTITRKANEILEELAKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKVNEQTKLREALDLASISRRNLDSLLEIAIGNKTIEDFMKEQKAEAKNTIEILKSSINWKPPSNFKEFLIVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPIIVAFHTATILEGIGVYFDIRVMGEDIAVKMVRPEVYPLRKKEFGEFLEQQVENELAK
Ga0105163_1032084	Ga0105163_10320842	F051554	MQLKYYVTFKAQEGSAEYSLKEKLINIEGVAIDTSVNKNKWQVPREDLQHIVESLKGAQLRVDHAESALMVVGKVVDAWIDGERVLFRAEVGEEKLIEKILRGYVSHVSIQVDSDEVECSKCKRQTRRDGMLIHLCPGAWEIVHKPRVRELSIVASPAYDNTEFKPLGFYAAMNDAQWNAIVETFTKAGLLETSKSSQSSPNVDGDVGSKAESLQEPEQKPVLKTPQNEVKPHMDAKQEASPQTAQ
Ga0105163_1038290	Ga0105163_10382902	F103293	MQLETLKELPRPYEIYEFVPCHPADFKIVRYEIGKITITPKWPGAPTTKTIPAIRLHVDPATKPTFPHYWDITPTRLVHQLAAMLTAQFEPGKTIRIHRDIPGPK
Ga0105163_1048316	Ga0105163_10483161	F103293	MQLETLKELPRPYEIYEFVPCHPADFRIIRYEIGKITITPKWPGAPTTKTIPAIRLHVDPATKPAFPHYWDITPTRLVHQLAAMLTAQFEPGKTIRIHRDIPGPK
Ga0105163_1066580	Ga0105163_10665802	F004454	MRQVYRRTVVEVREDLHREIRKLALLNDLRIYVLANAIIEEFLKDEERVRALVKRLRLQHLGA*
Ga0105163_1073344	Ga0105163_10733442	F078228	MAKKFTMSMPDDMYAALEKERQKRKLGTIQELIRFIISDYFKEKTT*

Scaffold ID

Protein ID

Family

Sequence

Ga0105163_1012339

Ga0105163_10123394

F064214

MSEKGDLKVLAKSAEDLAYALRDTLDVLADHERRIKRLEEKLGFLADVESRVVEKAVAGGHVE*

Ga0105163_1017149

Ga0105163_10171492

F079345

MLSKALNLELEGLSVLQRKLLLQLLHRRYPHYWDKFTSHEYTWQSRKEALEEFLQNHQTELVKEFVRAGLHGNGWKTTRRSGARVQG*

Ga0105163_1017683

Ga0105163_10176833

F079345

MLSKALNLELEDLSVLQRKLLLELVHRKHPHYWSKITGHEYSWQSRKEALEEFLQNHQTELVEEFAKSGLHGNGWKTTRKGGIRV*

Ga0105163_1023426

Ga0105163_10234262

F020112

MEKEAPKTRIKGELQMISRAFRKCVELVEEMLGRGYRLQIPSTEVERLIKIGVGADKRTVQKYMRMLTEDLGFLKTAAKNPLGVVIYRIDVEAIEQFVGEHLKDKLRQLKLSDIRLEQNSIEEEVKTEKI*

Ga0105163_1024346

Ga0105163_10243463

F038537

MRRSVYVWRELAPLVLRFCRESGICFNEVVNRAISGFLGSCDVERLRLEARLDVLLREEARLRRVCNAMLRSGSYLPGYVRRVLREPGRSLSHLPDPQRPLKALNPREERVFRRIVARREQIAREIAEIEEQLLQDVKPFRLKPDLHGRSRSRRRLCDKKGLKEVKKPNGETAQDG*

Ga0105163_1026704

Ga0105163_10267042

F025877

MPGLDETENTFRYRVQNPDKFDRFRVKEITHGVKITLGRVKGTSRWEIQNYLFDKKLFRTREQVQKWLEKHLKSEVKTLLDFNAWNEHRKRLLQVYLEISKIA*

Ga0105163_1030897

Ga0105163_10308972

F091324

MSVHLHTTITRKANEILEELAKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKVNEQTKLREALDLASISRRNLDSLLEIAIGNKTIEDFMKEQKAEAKNTIEILKSSINWKPPSNFKEFLIVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPIIVAFHTATILEGIGVYFDIRVMGEDIAVKMVRPEVYPLRKKEFGEFLEQQVENELAK

Ga0105163_1032084

Ga0105163_10320842

F051554

MQLKYYVTFKAQEGSAEYSLKEKLINIEGVAIDTSVNKNKWQVPREDLQHIVESLKGAQLRVDHAESALMVVGKVVDAWIDGERVLFRAEVGEEKLIEKILRGYVSHVSIQVDSDEVECSKCKRQTRRDGMLIHLCPGAWEIVHKPRVRELSIVASPAYDNTEFKPLGFYAAMNDAQWNAIVETFTKAGLLETSKSSQSSPNVDGDVGSKAESLQEPEQKPVLKTPQNEVKPHMDAKQEASPQTAQ

Ga0105163_1038290

Ga0105163_10382902

F103293

MQLETLKELPRPYEIYEFVPCHPADFKIVRYEIGKITITPKWPGAPTTKTIPAIRLHVDPATKPTFPHYWDITPTRLVHQLAAMLTAQFEPGKTIRIHRDIPGPK

Ga0105163_1048316

Ga0105163_10483161

F103293

MQLETLKELPRPYEIYEFVPCHPADFRIIRYEIGKITITPKWPGAPTTKTIPAIRLHVDPATKPAFPHYWDITPTRLVHQLAAMLTAQFEPGKTIRIHRDIPGPK

Ga0105163_1066580

Ga0105163_10665802

F004454

MRQVYRRTVVEVREDLHREIRKLALLNDLRIYVLANAIIEEFLKDEERVRALVKRLRLQHLGA*

Ga0105163_1073344

Ga0105163_10733442

F078228

MAKKFTMSMPDDMYAALEKERQKRKLGTIQELIRFIISDYFKEKTT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007999: Hot spring microbial communities from Jinze hot spring, China to study Microbial Dark Matter (Phase II) - JNZ 110809A

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences