Sample 3300008000

Overview

Basic Information
IMG/M Taxon OID	3300008000 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0127790 \| Ga0105162
Sample Name	Hot spring microbial communities from Jinze hot spring, China to study Microbial Dark Matter (Phase II) - JNZ 20120812A
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	235708933
Sequencing Scaffolds	11
Novel Protein Genes	11
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	9
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Baoshan, Yunnan, China
Coordinates	Lat. (^o)	25.4413	Long. (^o)	98.46	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004454	Metagenome / Metatranscriptome	437	Y
F020112	Metagenome	226	Y
F024925	Metagenome / Metatranscriptome	204	Y
F038537	Metagenome	165	Y
F051554	Metagenome	144	Y
F064214	Metagenome	129	Y
F078228	Metagenome	116	Y
F079345	Metagenome / Metatranscriptome	116	Y
F103293	Metagenome	101	Y

Family

Category

Number of Sequences

3D Structure?

F004454

Metagenome / Metatranscriptome

437

F020112

Metagenome

226

F024925

Metagenome / Metatranscriptome

204

F038537

Metagenome

165

F051554

Metagenome

144

F064214

Metagenome

129

F078228

Metagenome

116

F079345

Metagenome / Metatranscriptome

116

F103293

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0105162_1014803	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2184	Open in IMG/M
Ga0105162_1017175	All Organisms → cellular organisms → Archaea → Euryarchaeota	1907	Open in IMG/M
Ga0105162_1018239	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	1807	Open in IMG/M
Ga0105162_1018654	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1770	Open in IMG/M
Ga0105162_1022275	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1501	Open in IMG/M
Ga0105162_1033834	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1039	Open in IMG/M
Ga0105162_1034351	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1026	Open in IMG/M
Ga0105162_1041280	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	876	Open in IMG/M
Ga0105162_1060038	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	643	Open in IMG/M
Ga0105162_1073194	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	552	Open in IMG/M
Ga0105162_1078691	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	520	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0105162_1014803

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

2184

Open in IMG/M

Ga0105162_1017175

All Organisms → cellular organisms → Archaea → Euryarchaeota

1907

Open in IMG/M

Ga0105162_1018239

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon

1807

Open in IMG/M

Ga0105162_1018654

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1770

Open in IMG/M

Ga0105162_1022275

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1501

Open in IMG/M

Ga0105162_1033834

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1039

Open in IMG/M

Ga0105162_1034351

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1026

Open in IMG/M

Ga0105162_1041280

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

876

Open in IMG/M

Ga0105162_1060038

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

643

Open in IMG/M

Ga0105162_1073194

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

552

Open in IMG/M

Ga0105162_1078691

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

520

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0105162_1014803	Ga0105162_10148034	F020112	MEKEAPKTRIKGELQMISRAFRKCVELVEEMLGRGYRLQIPSTEVERLIKIGVGADKRTVQKYMRMLTEDLGFLKTAAKNPLGVVIYRIDVEAIEQFVGEHLKDKLRQLKLSDIRLEQNSIEKEVKTEKI*
Ga0105162_1017175	Ga0105162_10171752	F078228	MAKKFTMSMPDDMYAALEKERQRRKLGTIQELIRFIISDYFKEKTT*
Ga0105162_1018239	Ga0105162_10182393	F103293	MELQALRELSRPYEIYEFVPCHPVDFKVMRYEVGRITIAPRWPGAPPQKTVIAVRLHVDPTTKPTFPYYWDITPSRLVHQLAAMLAADFKPGRTIRIHRDIPGPKAHFTVQWL*
Ga0105162_1018654	Ga0105162_10186543	F079345	MLSKALNLELEDLSVLQRKLLLELVHRKHPHYWSKITGHEYSWQSRKEALEEFLQNHQTELVEEFAKSGLHGNGWKTTRKGGIHV*
Ga0105162_1022275	Ga0105162_10222752	F004454	VVEVREDLHREIRKLALLNDLRIYVLANAIIEDYLKDEQRVKALIKRLKLETGSPIH*
Ga0105162_1033834	Ga0105162_10338341	F038537	VITLLVKVWFWRDLYPIVKSFCREHNLPFNRVVNLALQSFLGSCDTEEFKLRARLSTLLREECELRRVQNVMLRSGSYLPSYVAKVLREPGRSLTHIPDAQRPLKALNPKEERVFRRIASRREQIAREIAEIEERLLRDVRPFRLKPDLHGRSRSRRRLCGKINLKEVKKLDGETA*
Ga0105162_1034351	Ga0105162_10343513	F038537	MRRSVYVWRELAPLVLRFCRESGICFNEVVNRAISGFLGSCDVERLRLEARLDVLLREEARLRRVCNAMLRSGSYLPGYVRRVLREPGRSLSHLPDPQRPLKALNPREERVFRRIVARREQIAREIAEIEEQLLQDVKPFRLKPDLHGRSRSRRRLCDKKGLKEVKKPNGETA
Ga0105162_1041280	Ga0105162_10412801	F051554	MQLKYYVTFKAQEGSAEYSLKEKLINIEGVAIDTSVNKNKWQVPREDLQHIVESLKGAQLRVDHAESALMVVGKVVDAWIDGERVLFRAEVGEEKLIEKILRGYVSHVSIQVDSDEVECSKCKRQTRRDGMLIHLCPGAWEIVHKPRVRELSIVASPAYDNTEFKPLGFY
Ga0105162_1060038	Ga0105162_10600381	F024925	VRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEIITTTFQNLLSFKLKLLEKPVLEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPDDYPWTIREVGERITDMYRELGIEVEIEYFEGGFTLKYKSCPYYRLVKTGQKTWLCSLRKKTIEYIISRVSHGKKGKIKIIKSLLQNEHPCEYAIFLTGFLEKEEKAEA*
Ga0105162_1073194	Ga0105162_10731941	F024925	EVRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEITTTTFQNLLSFKLKLLEKPILEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPDDYPWTIREVGERITDMYRELGIEVEIEYFEGGFTLKYKSCPYYKLVKTGQKTWLCSLRKKTIEYIISRVSHGKKGKIKIIKSLL
Ga0105162_1078691	Ga0105162_10786912	F064214	VSGKGDLKVLVKSAEDLAYALRDTLDVLADHERRIKRLEEKLGFLADVESRVVEKAVAGGHVE*

Scaffold ID

Protein ID

Family

Sequence

Ga0105162_1014803

Ga0105162_10148034

F020112

MEKEAPKTRIKGELQMISRAFRKCVELVEEMLGRGYRLQIPSTEVERLIKIGVGADKRTVQKYMRMLTEDLGFLKTAAKNPLGVVIYRIDVEAIEQFVGEHLKDKLRQLKLSDIRLEQNSIEKEVKTEKI*

Ga0105162_1017175

Ga0105162_10171752

F078228

MAKKFTMSMPDDMYAALEKERQRRKLGTIQELIRFIISDYFKEKTT*

Ga0105162_1018239

Ga0105162_10182393

F103293

MELQALRELSRPYEIYEFVPCHPVDFKVMRYEVGRITIAPRWPGAPPQKTVIAVRLHVDPTTKPTFPYYWDITPSRLVHQLAAMLAADFKPGRTIRIHRDIPGPKAHFTVQWL*

Ga0105162_1018654

Ga0105162_10186543

F079345

MLSKALNLELEDLSVLQRKLLLELVHRKHPHYWSKITGHEYSWQSRKEALEEFLQNHQTELVEEFAKSGLHGNGWKTTRKGGIHV*

Ga0105162_1022275

Ga0105162_10222752

F004454

VVEVREDLHREIRKLALLNDLRIYVLANAIIEDYLKDEQRVKALIKRLKLETGSPIH*

Ga0105162_1033834

Ga0105162_10338341

F038537

VITLLVKVWFWRDLYPIVKSFCREHNLPFNRVVNLALQSFLGSCDTEEFKLRARLSTLLREECELRRVQNVMLRSGSYLPSYVAKVLREPGRSLTHIPDAQRPLKALNPKEERVFRRIASRREQIAREIAEIEERLLRDVRPFRLKPDLHGRSRSRRRLCGKINLKEVKKLDGETA*

Ga0105162_1034351

Ga0105162_10343513

F038537

MRRSVYVWRELAPLVLRFCRESGICFNEVVNRAISGFLGSCDVERLRLEARLDVLLREEARLRRVCNAMLRSGSYLPGYVRRVLREPGRSLSHLPDPQRPLKALNPREERVFRRIVARREQIAREIAEIEEQLLQDVKPFRLKPDLHGRSRSRRRLCDKKGLKEVKKPNGETA

Ga0105162_1041280

Ga0105162_10412801

F051554

MQLKYYVTFKAQEGSAEYSLKEKLINIEGVAIDTSVNKNKWQVPREDLQHIVESLKGAQLRVDHAESALMVVGKVVDAWIDGERVLFRAEVGEEKLIEKILRGYVSHVSIQVDSDEVECSKCKRQTRRDGMLIHLCPGAWEIVHKPRVRELSIVASPAYDNTEFKPLGFY

Ga0105162_1060038

Ga0105162_10600381

F024925

VRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEIITTTFQNLLSFKLKLLEKPVLEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPDDYPWTIREVGERITDMYRELGIEVEIEYFEGGFTLKYKSCPYYRLVKTGQKTWLCSLRKKTIEYIISRVSHGKKGKIKIIKSLLQNEHPCEYAIFLTGFLEKEEKAEA*

Ga0105162_1073194

Ga0105162_10731941

F024925

EVRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEITTTTFQNLLSFKLKLLEKPILEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPDDYPWTIREVGERITDMYRELGIEVEIEYFEGGFTLKYKSCPYYKLVKTGQKTWLCSLRKKTIEYIISRVSHGKKGKIKIIKSLL

Ga0105162_1078691

Ga0105162_10786912

F064214

VSGKGDLKVLVKSAEDLAYALRDTLDVLADHERRIKRLEEKLGFLADVESRVVEKAVAGGHVE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008000: Hot spring microbial communities from Jinze hot spring, China to study Microbial Dark Matter (Phase II) - JNZ 20120812A

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences