NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008128

3300008128: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159713063 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008128 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053180 | Ga0114847
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 159713063 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size96914932
Sequencing Scaffolds19
Novel Protein Genes22
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis2
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2796
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus2
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1
Not Available2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033081Metagenome178Y
F040149Metagenome162N
F042387Metagenome158N
F045567Metagenome152N
F047508Metagenome149N
F051213Metagenome144N
F054109Metagenome140N
F055792Metagenome138N
F068942Metagenome124N
F073671Metagenome120N
F078842Metagenome116N
F084342Metagenome112N
F094006Metagenome106Y
F097527Metagenome104N
F098763Metagenome103N
F099454Metagenome103N
F103436Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114847_100001All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis578624Open in IMG/M
Ga0114847_100016All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis114881Open in IMG/M
Ga0114847_100026All Organisms → cellular organisms → Bacteria → Terrabacteria group91993Open in IMG/M
Ga0114847_100195All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27933303Open in IMG/M
Ga0114847_100661All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27916980Open in IMG/M
Ga0114847_100697All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27916286Open in IMG/M
Ga0114847_101274All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27910346Open in IMG/M
Ga0114847_101301All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27910203Open in IMG/M
Ga0114847_101931All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2797571Open in IMG/M
Ga0114847_103304All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli4890Open in IMG/M
Ga0114847_103671All Organisms → cellular organisms → Bacteria4426Open in IMG/M
Ga0114847_105323All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus3091Open in IMG/M
Ga0114847_105454All Organisms → Viruses → Predicted Viral3024Open in IMG/M
Ga0114847_108937All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1861Open in IMG/M
Ga0114847_114071Not Available1205Open in IMG/M
Ga0114847_114492All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1170Open in IMG/M
Ga0114847_123686All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas746Open in IMG/M
Ga0114847_124976All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus711Open in IMG/M
Ga0114847_134839Not Available508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114847_100001Ga0114847_100001588F078842MIISSIYKTADNDGLIAHIYEHLLAQYVLNRLQGNELFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKIVIPEDAILRAAGECGIEMNRNIVEVDRSELSKKLREVQLSPWCKQIDMAYRKAHDESSVNTLFRASYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIAMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKSLSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIRQMINSIELDIYETNS*
Ga0114847_100016Ga0114847_10001645F033081MCPPDIAVVHRPQKGAMAWLFKKGMPQDPKPVFVWPRLVTAIKDVGYFSRRELSVLAVGLIIVTIVTIKTLLLVPELNQSVVGLLTHGLEAFLPAGWATGAAWVVGMAGVFLMGNFTNYTPSQRFLHKTKATRCEAYNTLLLLALWEEQAFRSGSEKWSWRERVRASMCFGLAHIVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL*
Ga0114847_100026Ga0114847_10002660F054109MVGRPKSKKGTKVHTAFKIYPSDKERAQNMADKLGMSLSAYINKAVLEKVERDEKSEN*
Ga0114847_100195Ga0114847_10019513F055792MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKAIEAVALPHVARLDEGIPLQRIGGLGDLLVAPDVSQTDDL*
Ga0114847_100195Ga0114847_10019514F040149VADEGAEELRGEVLIEEQGIPVLFVEVVAWYDGRVSSSEVLSFVGIALEREPRLAPVWSHDSEDAIHDFIYDISVPKGHTLTAVRERETVVAQLLNIHRIF*
Ga0114847_100661Ga0114847_1006615F045567MRQRDGRDTLTEELEGGITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVKDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKERPSLSSERGCVVERVVR*
Ga0114847_100697Ga0114847_10069714F047508MLGHRLVEGRVKYPYLRRIGEYLRHSFDAEDVGRVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYATRVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0114847_101274Ga0114847_1012742F098763MDRRASLRVLSTALYLATKLFEAVIWATIADDSSDEVEGKGRMNTIPTAVDE*
Ga0114847_101301Ga0114847_1013012F094006MWGTLEPAGSTGALYEPAVCVEAHIGELQAGSIARRGFFAFGGSNVLAVAELGAKAPHAINMYDIAVCEPLSELFAEELEYAFNFGA*
Ga0114847_101931Ga0114847_1019315F098763MDRRTSLRVLSTALYLATKLFEAVVWATIADNPSDEVEGKGGMNAIPTAVDE*
Ga0114847_103304Ga0114847_1033043F103436MITTSKYGWCDDKSDAEILNSLKDWVSSCDVDFKREALKKIDSAFALWGGRQYVAAVDLLDENEVFLKKSDWPYYALGIEILKARKYEFFNE*
Ga0114847_103671Ga0114847_1036713F055792VEIASEALDSTSAVAHRILLLTTQLGESLLTSLRTEDGVIAETMVTGALERDLAIDCALEEVRPVFVDESDDGTEAGTTWGRYPLEAFQKEGYILFEGSMLPCEACGVDSRSSVKSLDLESRIIGKAIEAVALPDMTCLDESIPLQGIGGLRDLLVTPDVSQTDHLQTSRKEGTDLLQLMDIIARKYQLFHTFVS*
Ga0114847_103671Ga0114847_1036714F040149VADEGAEELRWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRAVGVALEREPWLAPVWSHDSEDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNVHRYVYYP*
Ga0114847_105323Ga0114847_1053235F097527MIYFKMEKIGNSRYNKEKKTRSENLVFNTIPAAGVEPARPCGHW
Ga0114847_105454Ga0114847_1054544F051213MKASKLLWAVVVALTFVLTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK*
Ga0114847_108937Ga0114847_1089373F084342VSGQCGAKLFLLGGYLAIPIRRPFFAQALKETLGQERGLRDAYDKDYQNEKALQWVHRRHILGICKEE*
Ga0114847_114071Ga0114847_1140713F073671MNKETEHELAELHEKERSLEKALELVREKIRELVNYTDKNKV*
Ga0114847_114492Ga0114847_1144922F042387MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYSNRKLSSVIDEAVISDSGIQYKKVVIREYRYNGSEVLVNENIKYHSESYAYNLKDENFTHTYVLNGENITKIHHQISKNVSGGHFYLNPNNMVVIDEEVIYDAKNSPYKNIKGFSALAAEFCSLDEKENTVADYLNFRWASHNPTLIKKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTV
Ga0114847_123686Ga0114847_1236861F099454KPKTHSGIKTLMKASKLLWAVIMAFTFVFTSCDPFSQNEPTLEDRGYKYFDSTAQRKSFRVVTASGKSYNHKVDWHIIGILDQNSGTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGQDRSVFFETKNDYKRTTSPSMKVIQQAK*
Ga0114847_124976Ga0114847_1249762F103436MMATSKYGCCDKSDAEILENLKDWVSKCDVSSKREALKKIDSAFALWGARQYVAAVHLLDENEVFLEKSDWPYYALGIEILKARKHEFFNE*
Ga0114847_126760Ga0114847_1267601F068942SVTEVHWSNVKNPEYGNAINITLKAEGETFTTVGDHSWISFSNDASTLDTFTRHRFPKVDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKQFKFSVSVTPPGLYIFKVRQPALPAKAQ*
Ga0114847_134839Ga0114847_1348391F054109MSGRPKSKKGVKVHTAFKIYPDDKARVQAMADKLDVSLSSYINKAVLEKVKRDEKSEN*
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