NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008134

3300008134: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159571453 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008134 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053007 | Ga0111464
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 159571453 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size127150278
Sequencing Scaffolds19
Novel Protein Genes24
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2794
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes6
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F022002Metagenome216Y
F036281Metagenome170N
F040149Metagenome162N
F043991Metagenome155N
F045567Metagenome152N
F047127Metagenome150N
F049707Metagenome146N
F051213Metagenome144N
F053092Metagenome141N
F055792Metagenome138N
F059076Metagenome134N
F061926Metagenome131N
F067847Metagenome125N
F071329Metagenome122N
F081454Metagenome114N
F089056Metagenome109N
F092231Metagenome107Y
F094006Metagenome106Y
F095632Metagenome105N
F097490Metagenome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0111464_100016All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279137753Open in IMG/M
Ga0111464_100025All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279115867Open in IMG/M
Ga0111464_100069All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae71531Open in IMG/M
Ga0111464_100100All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27959784Open in IMG/M
Ga0111464_100118All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae55988Open in IMG/M
Ga0111464_100177All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae45780Open in IMG/M
Ga0111464_100196All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes43426Open in IMG/M
Ga0111464_100431All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae28116Open in IMG/M
Ga0111464_100805All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27918552Open in IMG/M
Ga0111464_100904All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes17099Open in IMG/M
Ga0111464_101422All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes12145Open in IMG/M
Ga0111464_101861All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes9711Open in IMG/M
Ga0111464_103090All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes6405Open in IMG/M
Ga0111464_103173All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes6261Open in IMG/M
Ga0111464_120185Not Available1086Open in IMG/M
Ga0111464_121470All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia1018Open in IMG/M
Ga0111464_133529All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium648Open in IMG/M
Ga0111464_133889All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia642Open in IMG/M
Ga0111464_138185All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas565Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111464_100016Ga0111464_10001689F055792MEIASQTLDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLPIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLESRIIGKAMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL*
Ga0111464_100016Ga0111464_10001690F040149VADEGAKELRWKVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLSPVWHYDSEDAIHDFIYDISVPKGHTLTAVRERETVVMQLFNIHRMF*
Ga0111464_100025Ga0111464_10002524F094006MRGTLEPAGPTGALHEPAVSVEAHIGELQAGGIAHRGLFAFGGSNLLAVAELGAEAPHAIDMYDIALCKPLSELFAEELEYAFNFGA*
Ga0111464_100069Ga0111464_10006940F059076MTNKILLLGLLLGGVSINAQNINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNVKSAMDADLGGNTAATNHYTDYRPLVVDKVGDVYQGLPINNMSILTLTIDNVNGDYIRKFDTGIDYKKYAVTIMNAIFKMPDAGAGKIVMLRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLQKLE*
Ga0111464_100100Ga0111464_10010017F053092MQSDQGLILCLTHALLVLGALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK*
Ga0111464_100118Ga0111464_10011834F061926MMIKTAKHIKTFLASMLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVFS*
Ga0111464_100177Ga0111464_10017743F089056MNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHAFSLWNNDSLGCKHERTIEMGEELYNIFKKSNKNDSILLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ*
Ga0111464_100196Ga0111464_10019620F049707VVSEYRSPHNDGHDPYILIWEYGSEVQQAEFTERWAEYEPDTGWTVWYFRLDDGRVMKFRALEWEQRDDVNHLTTIYFTPKKEQQ*
Ga0111464_100196Ga0111464_10019641F095632MSFKETTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGQQYAENFAETIDSIKTPSNN*
Ga0111464_100431Ga0111464_10043110F047127MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFIDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIKEILEKYNSK*
Ga0111464_100431Ga0111464_10043124F081454MKAFKFILLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKIDMDGGYKFVGNKEVLDKIGMDGVKMTINSDIESTFSTQKKQGENVPFILEYTKYFYEAEINGEKVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDEDTKKILIESIKQFSAIDTHFPKEGLKIGDSFDMVIPYKQSIPQVGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVVTQQKIK*
Ga0111464_100805Ga0111464_10080510F045567MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0111464_100904Ga0111464_1009045F036281VITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNADGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRIPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQTYDWVLKNVEWAADTIRYF*
Ga0111464_101422Ga0111464_1014222F095632MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSLQTPQTN*
Ga0111464_101861Ga0111464_10186113F049707VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGVMTFSSREWEQKDDVNHLTTIWMRPSLYDIKRKEN*
Ga0111464_103090Ga0111464_1030906F067847MFSHIVRVQGFFDDEPTTKKLYFHLSRREMFDFIKRYDNITNFNAWVEAAIANNDLYTMMEFFDDLIGSAYGERQGERFIKNAQIKESFLNSPEYEELFDQLMNKPNLVREFYNGILPEKIMKQVKDDPKYKELDDKLKETELNNL*
Ga0111464_103173Ga0111464_1031732F018385MMADLFNSWLPYQELSIDKDRDPVLDDPIIYGNDVRHFTVTVYSTDGRVKKYWNARVLKDDMGYCRVACPRDGKILCFNWIHWTAYMFTHEGLNDLVFMPGNNRKTITQLYSNK*
Ga0111464_103173Ga0111464_1031733F071329MRPLYSKGTLMLPVAKIVLSGLTSIGAGMIASKLTKPLVSNASGIAKILLWFGSVGTGLAASAIVAREVEKQFDETVKAVKEARDHIEIED*
Ga0111464_103173Ga0111464_1031735F043991MSKKNPSVIDYFNLNGDLNEEASEFEGVKLEDYIDKRSSFKPSWTGRYGEHMHFDLESGVEVSFYKQPNVVYADILFYEGIRTILFKCRQKKNLTRFISRVLELAQGEPSNIHPDFRA*
Ga0111464_120185Ga0111464_1201851F022002LLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVQAGSKDASYIVSGLNYARRPTQTVCMFFYKGHLRRIVFIFNDLDVLEQIESELEDKYGTMAEGVGTSKMKSKVVFDAFTRLLVVRGFKYEGHVGFKDAYITYSDDELDRARSAEKESEI*
Ga0111464_121470Ga0111464_1214702F092231MIIFPPQEFITWTNTLVQFPWPIQLNDFPPYAEKLGWKPTSLPDEFGVCPDNDDEITILSSDRDGNVRNLFLYMASNEAEDDEGAAELNDHFVSCVAAGRKAWGEPFLLEAGDGPGVTWRFPGDMFTQVTNGSRAVLFNFFTPEGRRQFL*
Ga0111464_133529Ga0111464_1335291F097490LKKTQKMNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPIVSIMAKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0111464_133889Ga0111464_1338891F092231MIIFSPQDFITWANMLVQFPWPIQLGDFVPYAEQLGWKPTSLPDEFSVRDDEHVTLGDDEAGSICELFLHMASNETEDAEGAAELNDHLVSCVAAGRKAWGEPFLLEAGDGPGVTWRFPGDMFTQVTSGSRAVLFQFFTPEGRWYFL*
Ga0111464_138185Ga0111464_1381851F051213MNLYKILGALILALSFVFTSCDWVSNEPTIEGDHFKYFDSSAQRKSFRVVNALGKRYNHKVDWHIVGITQLGLKTYLTEKVDTLSNGDLKISYDWVSFTVKENKSVIEVEVQKNETGQARSVFFATRNSRYQAHLPNMI
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