NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008135

3300008135: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764224817 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008135 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053004 | Ga0111463
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 764224817 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size128194967
Sequencing Scaffolds22
Novel Protein Genes24
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
Not Available5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F022002Metagenome216Y
F041827Metagenome159Y
F043990Metagenome155N
F043991Metagenome155N
F049707Metagenome146N
F054111Metagenome140N
F061927Metagenome131N
F064818Metagenome128N
F070224Metagenome123N
F071327Metagenome122N
F077403Metagenome117N
F077404Metagenome117N
F077405Metagenome117N
F080165Metagenome115N
F085821Metagenome111N
F089056Metagenome109N
F090516Metagenome108N
F095632Metagenome105N
F097526Metagenome104Y
F099454Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0111463_1000396All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas24483Open in IMG/M
Ga0111463_1000640All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes17446Open in IMG/M
Ga0111463_1000877All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae14117Open in IMG/M
Ga0111463_1001211All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae11151Open in IMG/M
Ga0111463_1001793All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes8463Open in IMG/M
Ga0111463_1001945All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes7952Open in IMG/M
Ga0111463_1002081All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales7564Open in IMG/M
Ga0111463_1002810All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales5990Open in IMG/M
Ga0111463_1002888All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga5874Open in IMG/M
Ga0111463_1003150All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae5509Open in IMG/M
Ga0111463_1004395All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga4251Open in IMG/M
Ga0111463_1005537All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales3526Open in IMG/M
Ga0111463_1006382All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae3133Open in IMG/M
Ga0111463_1006671All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3010Open in IMG/M
Ga0111463_1006890Not Available2936Open in IMG/M
Ga0111463_1007201All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.2836Open in IMG/M
Ga0111463_1013970Not Available1580Open in IMG/M
Ga0111463_1017779Not Available1269Open in IMG/M
Ga0111463_1024759All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas947Open in IMG/M
Ga0111463_1026905All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena878Open in IMG/M
Ga0111463_1030602Not Available783Open in IMG/M
Ga0111463_1031079Not Available773Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111463_1000396Ga0111463_10003963F077404MAQQIIITHKLVAAALSLKEPTQIGNTKNPFAMNILKTAFAFFFALCFMMGANSYAQTTNRINAEASKRELKRNAIYIPPALEEYADTILLHQRFIVENKGNYLYTPFTKDNEPSIPFNYGFLHPLGERFYNSFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRRIKSDFSYGHPYQGFTDYDRVELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFEKLYTRGRKLILTDGKTTLYLYFLMIDSVAHNFDTEVLPYIKGVFHFNRIR*
Ga0111463_1000640Ga0111463_100064011F095632MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLADTIDSMKTTSTK*
Ga0111463_1000877Ga0111463_10008774F090516MKSNLSVELFLAFERYFIENDEDVSLDKISSGFTNVVLGIEFLPQNMTEDVERKKKLLKKYGFSSATALAEDFRERVLNYDEPIPEDFEKDGVGYVYTFISGYDAFYKRMYVFGIHCFEDCFEVTYFDLDNDAGAGDYYKDLEFYSQAKGYRWLNPESSYYGDVLAWEALNKLATEIYFHLEDKLDVKLDIEPIPVGEKVTPTQEHLAKFLAFCGVEQEVIDENKERLLKALEEYTPDKQEYISDVVTWITEYSNEIERALPVTGIISDYGNTSFSDWKFSAEDLEECVLNLVDFDEWEWEYPADTYGSDLFPYMRKQLYCYGFWLCNLDTGADEYVFLLFPEEDMPEIMRLTKILGIPLKAYFK*
Ga0111463_1001211Ga0111463_10012112F043990MIKKLGIIFTFGVIILGIVVYANHKIERSWIEGEFGVNMSNMNIDEKYREEEWAPNGDGEKTIILTYDQLGSSFTKLNKLPIKEDLPPNGIPKQFLNNTNGYYKYIGDENDDWNFGMLIVDTTRKEICIYNQIL*
Ga0111463_1001793Ga0111463_10017938F049707VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDDTGWTVWYFRLVDGGVMTFSAREWEQKDDVNHLTTIWMRPSLYDIERKTS*
Ga0111463_1001945Ga0111463_10019452F018385MAEYVNRWDPYSELSIEKDRDPVLDDHLIYGTNVEHYTLTVYSTEGRVSKYWNARILKDDLGRCRIACPREGKILCFSWFDWDAHMFTHDGMNELVFAPKLNSRSPQSLWNKKEVK*
Ga0111463_1001945Ga0111463_10019457F043991MGKKKPSAVDGFDLNGNVVEEANEFDGVLIEEWVNQRSPIKPSWVGRYSDQMHFDLKDGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA*
Ga0111463_1002081Ga0111463_10020815F080165MKNKKFLLAILLNLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR*
Ga0111463_1002810Ga0111463_10028106F041827NETPAPQNEKLVLLDKLREGSTVTFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDGQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLSYELPYYNHGIERIEDLRYIDNIKTRDFHEDDYILYEYTDDKGNSYDGDYPTKIFVFDKSHNDPTYSHQLWMFNASRYYIKEE*
Ga0111463_1002888Ga0111463_10028883F064818MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMQFDYSQNYEGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDKSKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKKLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGRKNYQQTAKQRILQRK*
Ga0111463_1003150Ga0111463_10031503F061927MKNSIFILSAMFILGACSSDSAQKVTEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE*
Ga0111463_1004395Ga0111463_10043953F054111MVFKNLEKASMDKPLDNITHEVFLKLMEHLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSLENQ*
Ga0111463_1005537Ga0111463_10055372F070224MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPVSGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDQNNLIVRKVGDPLVIENFFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHNKKADRYYKYRIALVIYMDYNHPEACIIH*
Ga0111463_1006382Ga0111463_10063825F089056MNVFCKIILPLLCIISCSKRKEADNTKTLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ*
Ga0111463_1006671Ga0111463_10066712F071327MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGTISEVLRKTAFFSMMLLYIQGILGVFLGIYSPEFSEASGFSSFFKLFEYGIIILICAGMITYVYTYLKKHQKLNLKIVIIALVSALLFEYAYPWRLIFG*
Ga0111463_1006890Ga0111463_10068901F022002EPIDRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARHPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGLADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0111463_1006890Ga0111463_10068902F022002MSRRLALTLGLLLALLLSLPAYAQDGQSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIIRTEGTQAGSDEQAYAVKGLKYARRSTLLAGLYFYKGHLRRIFFIFDDLDVLEQIESELEDKYGMMIESEGTSKSKSKGFFDAFTTLEVVRNFEYEGHSMFKDAYIAYTDEELDRARSAEKESEI*
Ga0111463_1007201Ga0111463_10072015F097526MAKDVAGTDMTTNDTKAITIYTQDDYRQLCERLDDDTVTALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSQLTQQCEKNGSRDTAIPLPRDDYGFAAAVRDFPLSETQTALLWRMALLTIAEMTDTAPSMVACYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLSHTAKLLRLTEVAEMRGAMPHRAVWQADNPKSRQSTLEPGE*
Ga0111463_1013970Ga0111463_10139702F077403MSAIYAEERISVHFEVRWHRERNPMDTLSRELDVSYLHVVYQNRTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSEQAYYLQGYLYYLMNPQQAHDWYQVTYLQGHAMHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIHGRWHFMLPDWQASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDRYEGYQLYQGLVRGDSIWIEM*
Ga0111463_1017779Ga0111463_10177791F077403EVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGRWQFLLPDWEASGRLRDECIPLNVYQLRGKGSTASTPSGYPLPEHYEGYQLYRGWVRGDSISIKM*
Ga0111463_1024759Ga0111463_10247591F099454MKASKLLWAVVMALTFVLTSCDRVTDEPTIEGKMNKFFDSQAQQKSFRVLTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK*
Ga0111463_1026905Ga0111463_10269051F085821MSNIFEQLAPLVETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFIAGNMPAVQLCIDYLVAQAYPTAENKKKFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYINAWNEANVNKTLSIIRSGETIASCKEDVVELAESLNDEYELNISLLYEYCRALLYTAETTESQQELVAETQSHIALLKDLYKKVNKIK*
Ga0111463_1030602Ga0111463_10306021F077405GRALPTELFPRLLVAKQRGVFYGFISLCQIKFVKKVFDCLKIVQK*
Ga0111463_1031079Ga0111463_10310791F022002MSRRLALTLGLLLALLLSLPSHAQDGLSKVPINRTISGFTLGVTTPAQARAIIQQLGGKIEGTQAGSDDEVYTVTGLKYARRSVFLASLQFYKGHLRRILFAFKDLDVLEQIESDLEEKYETMAEGKETSKTKRKYIFDAFTSLKVVRSFKYEGHVGFEYAYISYTDLELDRAYSAEKESEI*
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