NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008136

3300008136: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764811490 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008136 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053055 | Ga0113979
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 764811490 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size199336242
Sequencing Scaffolds20
Novel Protein Genes21
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 4733
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip21
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2792
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Catonella1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032313Metagenome180N
F033081Metagenome178Y
F046432Metagenome151Y
F046433Metagenome151N
F051211Metagenome144N
F051213Metagenome144N
F054110Metagenome140N
F068942Metagenome124N
F071328Metagenome122N
F076191Metagenome118N
F080164Metagenome115N
F084342Metagenome112N
F085820Metagenome111N
F089055Metagenome109Y
F092230Metagenome107N
F094006Metagenome106Y
F095630Metagenome105N
F105380Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0113979_100004All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473513495Open in IMG/M
Ga0113979_100071All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473128251Open in IMG/M
Ga0113979_100073All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473126311Open in IMG/M
Ga0113979_100131All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip296093Open in IMG/M
Ga0113979_100462All Organisms → cellular organisms → Bacteria43246Open in IMG/M
Ga0113979_100508All Organisms → cellular organisms → Bacteria41315Open in IMG/M
Ga0113979_100866All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis28497Open in IMG/M
Ga0113979_100927All Organisms → cellular organisms → Bacteria27089Open in IMG/M
Ga0113979_102493All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria12880Open in IMG/M
Ga0113979_103250All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27910491Open in IMG/M
Ga0113979_104454All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2798057Open in IMG/M
Ga0113979_104468All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Catonella8033Open in IMG/M
Ga0113979_107716All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis4858Open in IMG/M
Ga0113979_109022All Organisms → cellular organisms → Bacteria4112Open in IMG/M
Ga0113979_110665All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria3434Open in IMG/M
Ga0113979_112713All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.2803Open in IMG/M
Ga0113979_114694All Organisms → cellular organisms → Bacteria2379Open in IMG/M
Ga0113979_115881All Organisms → Viruses → Predicted Viral2180Open in IMG/M
Ga0113979_116814All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae2034Open in IMG/M
Ga0113979_130658All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria955Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0113979_100004Ga0113979_100004402F032313MYRFLILIFALTLMACDNNTPQEKPHEQEKHEVPVPVSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPYDWYYGRNSGRSEVTLEAK*
Ga0113979_100071Ga0113979_10007142F068942MIRKILSLPTLALCFTLGSAFFAGCNENYIVNTETKVRWSNVKNPKYGDYINITLKAEGETFTTVGDHSRISFSGSVSTLDTFTRHDFSESDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKQFDFSIEVTPPGTYFFKVRQPALPAKAQ*
Ga0113979_100071Ga0113979_10007194F085820MLFLATTFFSCETGEPAPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTRADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDGLKQRIVLRLADGTEIEKELSDKGKK*
Ga0113979_100073Ga0113979_10007316F080164MVGLALCAAPQVTLRQRASAFPLITEKDESEIDAPYAWRLPVVPLSLDNREIRNFAKYPALPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVRKDGSRQAVDEQVTLHLPGFEKAEKPFLYKGQAGRLVLCEYYSSHRGDLLLDAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRS*
Ga0113979_100131Ga0113979_10013143F105380MSILELDSSQYVKQGRIFKKFDSALLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGGRLVYNRLCKGRMMDDIGTDDYEAWKRTPVNRASNFVNKFISARGNSDLDFISNPIRSNVANNIKGYAEFLASITKEQENVNTYEEFIEWTKNTNWLK*
Ga0113979_100462Ga0113979_10046235F076191MKIIAENPAEEALLWRIKALSDELVNQDNRSTNMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIEENGHHYDNPTIYVRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDV*
Ga0113979_100508Ga0113979_1005085F051211MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMVPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS*
Ga0113979_100866Ga0113979_10086620F054110VFDVNYQPTIKKLLKALQMNGRRYVVDVRQTWSKFDKPCKIYIVSRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGE*
Ga0113979_100927Ga0113979_10092715F046432MQMSESELNKVISKYQLPEDQYSIEQEGSFGRGEFFWVIKNESTNKKYLLMNTYSHHGVEAELECYREGGFDNLEAIPRRIETLEKASDADDEIFKYLFGFYSIFEIKS*
Ga0113979_102493Ga0113979_1024936F046432MQMSENELSEVILKFQMPEGRYLIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVEAELECYREEGFDNLEAIPRRIETLEVASDAEDEISKYLFGFYSIFEMKS*
Ga0113979_103250Ga0113979_1032507F051213MALTFVLISCDRVTDEPTIEGEMKKLFDSQAQRKSFRVLTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK*
Ga0113979_104454Ga0113979_1044542F094006MRGTLEPAGSTGALYKPAVSMEAHIGELQTGGIAGRGLFALRGGDLLAGGPXXXXCAFGRRDLLAVAELGAEAPHAINMYDIALCKPLSELFAKELEYAFNFGA*
Ga0113979_104468Ga0113979_1044685F092230MVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFSLIV*
Ga0113979_107716Ga0113979_1077161F046433MIELPTSPDALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMESRCETTEYEAINDFVQFIETTKHYLPDYMEDCAKELIVELAFLGMPELNFAANALAKRLRCHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGTIYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDALSLPALANIVRPYRNGKNFDGLSRFRQLLERE*
Ga0113979_109022Ga0113979_1090226F095630MIISSLYKTVENNGLLAHIYEHLLAQYVMKALQGRGFFILSDIILTAKTYGDTCFMDVEFYSSEAQDAYNEALRLFDKWDIPRSAALRAATECGIEMNRLVAELAQDELLHELSAVQSSPWRQQSDITYRKADSKSSVNTLFRMPCIKYGVESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVMQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDSIVHQLKCEFMEYVQFLSRSPFCDNLQAALVRCSHNYEQVLLDRGALNSILGGCVIGGKGWLKMADNTLIGQILKAIEIDVYDI*
Ga0113979_110665Ga0113979_1106654F033081MPRDTRPIFVWPKLVVAIEGYFHRRWLVAIAVLLIAVTIVIAKALLLVPGLDNSVVGLLTSIFETFLPARWATGAAWVAGMTGVFLIGDFTDYTPSQKSLHSLRATKWGVYNALLLFALWEEQAFRSGSEKWSWRERVRASVCFGAIHVVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRNQIVATGAAATVHTLYNVIVLSLTVAAAAVYLAIDIAKMM*
Ga0113979_112713Ga0113979_1127132F084342VSGQCGAKLFLLGGYLAIPICRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRHHILGICKEE*
Ga0113979_114694Ga0113979_1146942F089055LKVEKMNSTPKCVTETLEIEARKKEVRKKLDTIFSDAERRDSSKVNPELGKTAIDIENTSKMDPADNGAVYLCNQTLGSYGKSLDSINNSPFETVQAIGNSLQSFRKGKAEESCK*
Ga0113979_115881Ga0113979_1158813F054110VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGE*
Ga0113979_116814Ga0113979_1168142F071328MKWEFISEGECIVEFVKLYKHLVLERTIDPKIHQTTAIYLRYSQQLLLKKKRAIRRLGIGKKNVSAILRLCGIHYREYGDDEHRVFFLDTDVNIYFCKHSQLPIYILQRIEFSNKEYRSFILKVLPVKKGEW*
Ga0113979_130658Ga0113979_1306582F089055LKVEKMSSTPECVTKTPEIEAREKLAAIFSDAEQRDNSKVNPELGKTAIDIENTNFADNGAVDLCNKALGSYGKSLDRINNSPLEGVRAIGDSLRLLREEGKTKESCK*
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