Sample 3300008139

Overview

Basic Information
IMG/M Taxon OID	3300008139 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0053178 \| Ga0114845
Sample Name	Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 763961826 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	195881775
Sequencing Scaffolds	7
Novel Protein Genes	7
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F063778	Metagenome	129	Y
F070224	Metagenome	123	N
F077403	Metagenome	117	N
F077405	Metagenome	117	N
F097490	Metagenome	104	N
F101358	Metagenome	102	Y

Family

Category

Number of Sequences

3D Structure?

F027205

Metagenome

195

F063778

Metagenome

129

F070224

Metagenome

123

F077403

Metagenome

117

F077405

Metagenome

117

F097490

Metagenome

104

F101358

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0114845_1000225	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	29351	Open in IMG/M
Ga0114845_1000665	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	18077	Open in IMG/M
Ga0114845_1002989	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7000	Open in IMG/M
Ga0114845_1010457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	2691	Open in IMG/M
Ga0114845_1016903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1857	Open in IMG/M
Ga0114845_1039515	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	971	Open in IMG/M
Ga0114845_1055583	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	745	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0114845_1000225

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas

29351

Open in IMG/M

Ga0114845_1000665

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas

18077

Open in IMG/M

Ga0114845_1002989

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

7000

Open in IMG/M

Ga0114845_1010457

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis

2691

Open in IMG/M

Ga0114845_1016903

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae

1857

Open in IMG/M

Ga0114845_1039515

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium

971

Open in IMG/M

Ga0114845_1055583

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

745

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0114845_1000225	Ga0114845_100022521	F077403	MCTVHAEERVSVHFEVRWHRERNPMDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYKERERRHMTHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFVPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDRYEGYQLYQGLVRGDSIWIEM*
Ga0114845_1000665	Ga0114845_10006657	F070224	MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNAGDPLVIENFFAYYAAEFPKMKEYELYYKGTGEKITKEDFDSIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVVEHDKKADRYYKYRIALVIYMDYDHPEACIIH*
Ga0114845_1002989	Ga0114845_10029898	F027205	LERRTTARRPLISADDILRAVKESEEFERKALVEAQKRDRAAGKKPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0114845_1010457	Ga0114845_10104572	F063778	MPETISEGAQQKLLQQLQNALGLVADADTSAHDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAMGNIEAIPLDPPPED*
Ga0114845_1016903	Ga0114845_10169031	F077405	WQGRALPTELFPRLLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQK*
Ga0114845_1039515	Ga0114845_10395151	F101358	MTEKYSASLSPRQEHLLTQPITTDGTPKERATHPDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPIHRSNIDRLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPVADTTHATTSSQEQQTEVLLAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSPLVERVLGHVE*
Ga0114845_1055583	Ga0114845_10555831	F097490	IMKAKFYKIVTLLLMLSCKEHQDVEVYNMKIDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKTIKYKYNNEKEYKIDEFYTVFPYNGYYNEIGKKMHFMLKNV*

Scaffold ID

Protein ID

Family

Sequence

Ga0114845_1000225

Ga0114845_100022521

F077403

MCTVHAEERVSVHFEVRWHRERNPMDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYKERERRHMTHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFVPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDRYEGYQLYQGLVRGDSIWIEM*

Ga0114845_1000665

Ga0114845_10006657

F070224

MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNAGDPLVIENFFAYYAAEFPKMKEYELYYKGTGEKITKEDFDSIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVVEHDKKADRYYKYRIALVIYMDYDHPEACIIH*

Ga0114845_1002989

Ga0114845_10029898

F027205

LERRTTARRPLISADDILRAVKESEEFERKALVEAQKRDRAAGKKPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*

Ga0114845_1010457

Ga0114845_10104572

F063778

MPETISEGAQQKLLQQLQNALGLVADADTSAHDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAMGNIEAIPLDPPPED*

Ga0114845_1016903

Ga0114845_10169031

F077405

WQGRALPTELFPRLLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQK*

Ga0114845_1039515

Ga0114845_10395151

F101358

MTEKYSASLSPRQEHLLTQPITTDGTPKERATHPDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPIHRSNIDRLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPVADTTHATTSSQEQQTEVLLAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSPLVERVLGHVE*

Ga0114845_1055583

Ga0114845_10555831

F097490

IMKAKFYKIVTLLLMLSCKEHQDVEVYNMKIDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKTIKYKYNNEKEYKIDEFYTVFPYNGYYNEIGKKMHFMLKNV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008139: Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 763961826 reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences