NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008145

3300008145: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160704339 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008145 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053163 | Ga0114317
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 160704339 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size41422320
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → unclassified Candidatus Saccharimonas → Candidatus Saccharimonas sp.1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078842Metagenome116N
F089055Metagenome109Y
F095633Metagenome105N
F103433Metagenome101N
F105378Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114317_100129Not Available27959Open in IMG/M
Ga0114317_100153All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis23979Open in IMG/M
Ga0114317_100212All Organisms → cellular organisms → Bacteria20268Open in IMG/M
Ga0114317_101603All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis4123Open in IMG/M
Ga0114317_105985All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → unclassified Candidatus Saccharimonas → Candidatus Saccharimonas sp.1158Open in IMG/M
Ga0114317_108062All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria852Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114317_100129Ga0114317_10012921F105378MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKNKWNNKLNAPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTTDAISIYNTGSFTGSFQCLIVYPLGSVNE*
Ga0114317_100153Ga0114317_10015321F078842MIISSIYKTADNDGLIAHIYEHLLAQYVLKSLQDNGFFVLSDIILSAKTYGDTCFMDAELYSPEVKKTYDEALRKFDKLIIPEDDILRAASECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKTHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPIDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEVSISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIRQMINSIELDVYEVNL*
Ga0114317_100212Ga0114317_1002129F103433MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAAGSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDTSKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGRITASVFVVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFMSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINQIVNLDNMANNNGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTIFGYLIILSSRKIISKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYMPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0114317_101603Ga0114317_1016035F089055LKVEKMNSTPKCVTETLELEAAREEIADILSDAEQRDNYKVNPELGKTAFDVANIPDNEAVDLCNQALGSYGKSLDRINGNPLKIVREIGDLLQSFREDKTKGSCK*
Ga0114317_105985Ga0114317_1059852F095633MGNYENFTEVGRGEGLTEGELRTMGALAMKATEELKKTTIRKETVLLGSVPFGSWDEFAKAVQEMAAHSYEPIPVEINTKRLIAKAFLDDRGEMSVEENFVPEDVFIDLSRTRCDAEEDRNRKSYEFTCPALERYPDGELCPTRKAYVISAIDVNGSQEVDFNIIYGGLN*
Ga0114317_108062Ga0114317_1080621F078842LQDNGFFVLSDIILSAKTYGDTCFMDAELYSSEAKKTYDKALREFDKLVISEDDILRAASECGIEMNRDIVEVDRSELSKKLREVQISSWRKQIDMAYRKAHDESSVNTLFHTSYVRYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRDDQWSEASISVGYRMFLGLLKKDDKIINQLGYDFLEYVKSLSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIGQMVNSIELDIYEVNS
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