NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008150

3300008150: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 246515023 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008150 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053149 | Ga0114319
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 246515023 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size237489386
Sequencing Scaffolds24
Novel Protein Genes25
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2781
Not Available2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F027205Metagenome195N
F030786Metagenome184N
F036281Metagenome170N
F042387Metagenome158N
F043990Metagenome155N
F046431Metagenome151Y
F047127Metagenome150N
F051212Metagenome144N
F051213Metagenome144N
F054110Metagenome140N
F058221Metagenome135N
F061926Metagenome131N
F066860Metagenome126N
F070224Metagenome123N
F076191Metagenome118N
F077404Metagenome117N
F080165Metagenome115N
F081456Metagenome114N
F085821Metagenome111N
F095630Metagenome105N
F101359Metagenome102N
F105378Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114319_1000016All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 278174109Open in IMG/M
Ga0114319_1000099Not Available73397Open in IMG/M
Ga0114319_1000333All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria41136Open in IMG/M
Ga0114319_1001000All Organisms → cellular organisms → Bacteria22628Open in IMG/M
Ga0114319_1001271All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes19367Open in IMG/M
Ga0114319_1001301All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas19054Open in IMG/M
Ga0114319_1002407All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium12920Open in IMG/M
Ga0114319_1004118All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis8841Open in IMG/M
Ga0114319_1004406All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes8449Open in IMG/M
Ga0114319_1004945All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium7726Open in IMG/M
Ga0114319_1005600All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas7043Open in IMG/M
Ga0114319_1013120All Organisms → cellular organisms → Bacteria3419Open in IMG/M
Ga0114319_1014955All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae3018Open in IMG/M
Ga0114319_1016401All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis2769Open in IMG/M
Ga0114319_1017216All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga2641Open in IMG/M
Ga0114319_1017814All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae2556Open in IMG/M
Ga0114319_1020516All Organisms → Viruses → Predicted Viral2222Open in IMG/M
Ga0114319_1025305All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae1793Open in IMG/M
Ga0114319_1025336All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1790Open in IMG/M
Ga0114319_1028094Not Available1611Open in IMG/M
Ga0114319_1028333All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1598Open in IMG/M
Ga0114319_1049111All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales879Open in IMG/M
Ga0114319_1056221All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium755Open in IMG/M
Ga0114319_1078468All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114319_1000016Ga0114319_100001650F051213MGSYEQSAGGDLSGGYTYTCKRKPFARRTGMHRYSCLAKQIHPMNLYKILGALILALSFVFTSCDWVANEPTIEGNIDKYFDSSAQRKSFRVVNASGKRYNHKVDWHIIGITQLDSDTFFTKKVDTLPNGDLKISYDWVSFTVKERKSVIEVEVQKNETGQDRSVFFATRNNRYQAHRPNMIIMQFAK*
Ga0114319_1000099Ga0114319_100009910F105378MNINVYVDNIKKWVQISSDEVLDRNKNLSDLKDKNAAIINLGLYDKFISKEALESGFLPDIFTPENIVTDSNHQFVTDAEKNKWNNKLNKPIANQDHLEENQIGYDELNEKFYIGLNNKNVLIGGASALDNIKVVNGFFSGNSQATVIRNTKQNQNGEFIRPIFVDVQCTEYTGGDLGEISVTYTAEAINVYNTGSFTGSFQCMIVYPLGSANR*
Ga0114319_1000333Ga0114319_100033323F076191MKITAESPAEIALMWRIKALSDELVNQDNRCTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYDNPTTCIRSAHDNQELKDVIHLLILAGGNEIPNNHYGSLSNA*
Ga0114319_1001000Ga0114319_100100013F027205MRAVKESEEFERKALAEARKRDRAEGKEPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSAK*
Ga0114319_1001000Ga0114319_100100014F036281MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKELFVTEFKPTCDDQWIMYMTNVDGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRLSDDLKSKFTRHTITNEKGHQSYDWVLKNVEWAADTIRYF*
Ga0114319_1001271Ga0114319_100127119F081456LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAISFATWLVWLTNAAFFVKLVITAIGFLFAAFTVILYTISAE*
Ga0114319_1001301Ga0114319_100130111F022002VPINRTISGFTLGVTTTAEARAIIQRQGGKIEDTQAGSDEEVYVIMGLKYARRSTLSVGLYFYKGHLRRIAFVFNNLDVLEQIESELVDKYGTMAEGVGTSKEKVKGIVDAFTTLEVVRRFDYEGHIGFECAYIAYTDEELERAYSAETESEI*
Ga0114319_1002407Ga0114319_10024074F046431MKRISKIFITIILMLLIIITYGARIITMAAESDLVITPKPETNNIHLKWTGPQNSSYKVYQKKPGSNQFETIGLTDFSNNATDEEVKVLNIYPEAEGVPEVEVTYLDGHIETIPKSALLKAWMEGRNSKRRTKYN*
Ga0114319_1004118Ga0114319_100411817F095630MIYSSLYKTVENNGLLAHIYEHLLAQYVMKALQRRGFFISSDITLTAKTYGDTCFIDAELYNPEAQDAYNEALRLFDEWDIPGDAALRVAGECGIEMNRVVAELKQDELLRSLNMVQLSAWHQQSDLTYRKADDKSSVNTLFRVPYIKYSRKSKSLFPEYVLEYSVDEKYIQSPVDQALAAVVMQVAALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYVQFLSASSFCNNLQAALVRCSHNYEQVLLGRDTLNSILGGCVVGGRGWLEMADNTLIGQILKAIEIDVYDI*
Ga0114319_1004406Ga0114319_100440611F030786MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSTTKGRNAMGTKKISLVDITDGDKSKVVAIKVKYFDDDGADKIFENNNNRILNTINSQHISFNSQSAEYSKPQLFLLYQSLKVDC*
Ga0114319_1004945Ga0114319_100494512F046431LTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGATQFETIGLTDFSNNAIDEEVKVLNIYPQENNADPRLYPDLTPEQVRQHFTSLPKVQVTYLDGQTETIQKSALLKAWMEGRNSKRR*
Ga0114319_1005600Ga0114319_10056006F070224MKRLLFLLLTLLHYTAWSQGYNAPDSIYVASGAVYIPPVSGEPIYLLASPLKSGHTPGHKLRTRDWVKVDYSDRNNIIIMGFGNSLVIENLFIYYAAGFPGMKEYELYYKGTGEEIAKEDFDSIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYNHPEACIIH*
Ga0114319_1013120Ga0114319_10131203F043990MIKKLGIIFTFGVIILEIVVYANHKIERSWIEGEFGVNMSNMNIDEKYREEEWAPNGDGEKTIILTYDQLDSSFTKSNKLPIKEDLPPNGIPKQFLNNTNGYYKYIGDENDDWNFGMLIVDTTRKEICIYNQIF*
Ga0114319_1014955Ga0114319_10149552F042387MKRIILFFMAGFFLVSCSRENDKMTDETLVNSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERVVFVYEKDFITSKIRYSQSGEELGKTNYQYNNGKLSSVIDEAVISDSGIQYKKVITREYSYNSSEVSVNENVKYHSESYAYNLKDENFTHTYVLNGENITKIHHEISKNVPSGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSVLAVEFCGLDKDENTIADYLNFRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVTTMVYEYNK*
Ga0114319_1016401Ga0114319_10164014F066860MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTSGIAEDREETTEDVAI*
Ga0114319_1017216Ga0114319_10172162F085821MNHIFEQLAPLAETKKQQTTIAKFIEKGFKFTRQPDAQKFTFLVYDFFIAGNMPAVQLCLDYLVAQGYPTAENKKQFLNWVFMEPIYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYINAWNEASVNKTLSIIRSGETIASGKEDVVELAESLNDEYELNISLLDEYCRALLYTAETTQSQQELIAETQSHIALLKDLYKKVNKIK*
Ga0114319_1017814Ga0114319_10178143F077404MAQQIIITHKLVAAALSLKEPTQIGNTKNPFAMNILKTAFAFFFALCFMMGANSYAQTTNRINAEASKRELKRNAIYIPPALEEYADTILLHQRFNVENKGNYLYTPFTKDNEPSIPFNYGFLHPLGERFYNSFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKMADLKYLDFRHIKSDFSYGHPYQGFTDYDRVELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLYLYFLMIDSVAHNFDTEVLPYIKGVFHFNRIR*
Ga0114319_1020516Ga0114319_10205163F054110VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVSRMYTEEEYKLTFPHKYKKGKTFKPKQLYKKESEYSSTKQHEVLLFLVKAYKGGD*
Ga0114319_1025305Ga0114319_10253054F058221MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGIMDSGLAQNAYSLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI*
Ga0114319_1025336Ga0114319_10253363F051212MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVYLVITKDSIIYRLTEGVTDKKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSQLYNHLNLEK*
Ga0114319_1028094Ga0114319_10280942F022002GRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGIHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLCSIYFGFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEI*
Ga0114319_1028333Ga0114319_10283331F101359KDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQRQSFTDSYKETVK*
Ga0114319_1049111Ga0114319_10491112F047127MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGEKRQAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGNEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGD
Ga0114319_1056221Ga0114319_10562212F061926MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKNDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0114319_1078468Ga0114319_10784681F080165RTISTLELEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQALQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEKDSLQYTFTRYILR*
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