NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008276

3300008276: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763860675 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008276 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053120 | Ga0114259
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 763860675 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size118142399
Sequencing Scaffolds24
Novel Protein Genes24
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2794
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria4
Not Available6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033081Metagenome178Y
F040149Metagenome162N
F043990Metagenome155N
F045567Metagenome152N
F053092Metagenome141N
F055792Metagenome138N
F061925Metagenome131N
F061927Metagenome131N
F064819Metagenome128N
F066860Metagenome126N
F067846Metagenome125Y
F071328Metagenome122N
F077404Metagenome117N
F077405Metagenome117N
F080164Metagenome115N
F081454Metagenome114N
F089055Metagenome109Y
F090516Metagenome108N
F094006Metagenome106Y
F097490Metagenome104N
F103430Metagenome101N
F103431Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114259_1000700All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27914060Open in IMG/M
Ga0114259_1000919All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27911726Open in IMG/M
Ga0114259_1001463All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae8404Open in IMG/M
Ga0114259_1001674All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2797698Open in IMG/M
Ga0114259_1004112All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2793758Open in IMG/M
Ga0114259_1004495All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae3492Open in IMG/M
Ga0114259_1006554All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2561Open in IMG/M
Ga0114259_1007017Not Available2415Open in IMG/M
Ga0114259_1008672Not Available2015Open in IMG/M
Ga0114259_1008735All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2002Open in IMG/M
Ga0114259_1010112All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1761Open in IMG/M
Ga0114259_1010389Not Available1720Open in IMG/M
Ga0114259_1010411All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae1717Open in IMG/M
Ga0114259_1013561All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1371Open in IMG/M
Ga0114259_1015055Not Available1252Open in IMG/M
Ga0114259_1016176All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1174Open in IMG/M
Ga0114259_1017611Not Available1093Open in IMG/M
Ga0114259_1019375All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1012Open in IMG/M
Ga0114259_1019560All Organisms → cellular organisms → Bacteria1005Open in IMG/M
Ga0114259_1020018All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium986Open in IMG/M
Ga0114259_1030950All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium699Open in IMG/M
Ga0114259_1036966All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium610Open in IMG/M
Ga0114259_1037959Not Available598Open in IMG/M
Ga0114259_1040876All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium564Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114259_1000700Ga0114259_10007008F053092MQSDQGLILCLTHTFLILGALILEPAEMEDTMDDHTVQLFGILVAKELGIATHRIKADEHIPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELIAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK*
Ga0114259_1000919Ga0114259_10009196F094006MRGALEPADPTGALYESVVSEEAHIGELQAGGISRRDLFALGWSNVLAVAELGAEAPHAIDMYDIAVCEPLSELFGEELEYAFNFGA*
Ga0114259_1001463Ga0114259_10014639F077405RPWQGRALPTELFPRLLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQKQKVRLK*
Ga0114259_1001674Ga0114259_10016745F040149VADEGAEELRGKVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALEREPWLAPVWSHDSEDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0114259_1004112Ga0114259_10041123F045567MVTEDVVHTSTHRVKDALLPIDGDILTPRDGTHIVQAERVVVVLVSQENRIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0114259_1004495Ga0114259_10044953F090516MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYYDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGISEAMAEMMKYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPVDTYSADLFPYMRKQ
Ga0114259_1006554Ga0114259_10065543F066860MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLTIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAEDKE*
Ga0114259_1007017Ga0114259_10070175F103430MEPITIKAFIGSNNKTKKLEVDKIISTVSINHEAFTLDYPVIGCWRGEVEETAVLYLSDERQKVMNTLNKLKEVLDQEAIAYQIENKLNLI*
Ga0114259_1008672Ga0114259_10086722F080164MVGLTLCAAPQVTLRERASAFPLITEKDESEIIAPYAWRLPVVPLSLDNREIFNFVKYPTLPSLFGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPFLYKGQAGRLVLCEYYSSHRGDLLLDAANARPEIFGELNPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS*
Ga0114259_1008735Ga0114259_10087354F089055LELEATREELAAILSDAEQRDNSKVNPELGKTAFDVANIPNNEAVDLCNQALGGYGKSLDYINNNPLKTVREIGDLLQSFRKGKAEESCR*
Ga0114259_1010112Ga0114259_10101123F089055LKVEKMNSTPECVTKTPEIEAREKLAAIFSDAEQRGDNSKVSPELGKTAFDVNNLKTNIPNNEAVDFCRQALGSYEKSLDHINNGPLETVQTIGISLQRL
Ga0114259_1010389Ga0114259_10103892F067846MASFTAYDKEQEQYDAYERAVEMEIESIKEDIANCDDDVICVFREKMLDYDEVINAFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEEDCRKGYILND*
Ga0114259_1010411Ga0114259_10104112F103431MIDLDALIVRMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGSFGENIADCHAEDDNDKNAESQKEGFHVCIPEG*
Ga0114259_1013561Ga0114259_10135611F033081TFVWSRLVTEIENAGYFSRRKFSILAVGLIIMTIAMIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATATAWTVGIAGVFLMGNFTNYTPSQKFLHKIKATRYEVYNTLLLLALLEEQAFRSGSERWNWRERVRASVCFGLLHIMNIWYNFATGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNVIALSLIAVVLAIDIAKLL*
Ga0114259_1015055Ga0114259_10150552F071328MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAIYLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINLYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW*
Ga0114259_1016176Ga0114259_10161761F043990MIKKHGIIFTFGVIILGIVVYADHKIERSWTEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIMLTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNTTNGYYKYVVDENDDRSFDILIVDTTRKEICIYYQIL*
Ga0114259_1017611Ga0114259_10176111F077404MTCSRSRNPPNTDGSADHYAPQAGPALSRKKPTQIGNTKNPFAMNTLKTIFTFFFTLCFMMVANGYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTTLLHQKFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFW*
Ga0114259_1019375Ga0114259_10193752F055792MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKAIEPVALPDVTRLDESISLQGIGGLRDLLMTPDVSETDYLQTSREEGTDLLQLMSIIARKYQLFHTFVS*
Ga0114259_1019560Ga0114259_10195601F061925EKKKTGKSKQTNIRNNPMSWEYSINLDSEESVSSVVTDLKICELLSSSTTDYIDWKNPKSIDSTPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI*
Ga0114259_1020018Ga0114259_10200182F081454MKTFKLVLLLFITSASLVFGQEKRYFFKYEFQPNSKYLIKYKTDMDGEYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDEDTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLVDFVMGDKNVKNMDLSASGDGKGFLLFDMK
Ga0114259_1030950Ga0114259_10309502F061927CSSDSAQKVTEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDDRIEKAISSCIGE*
Ga0114259_1036966Ga0114259_10369661F064819MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSYLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQELEKYK*
Ga0114259_1037959Ga0114259_10379591F077405RPWQGRALPTELFPRLLVAKQRGVFYGFISLCQIKFVKKVFNWLKIIQK*
Ga0114259_1040876Ga0114259_10408761F097490KMNKKMNVFCKIILPLLCIISCSKRDEIEVYNMELDEEKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQDIGGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYIEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
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