Sample 3300008302

Overview

Basic Information
IMG/M Taxon OID	3300008302 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0053206 \| Ga0114874
Sample Name	Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 338793263 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	44789872
Sequencing Scaffolds	6
Novel Protein Genes	6
Associated Families	6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium → Fusobacterium periodonticum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	National Institutes of Health, USA
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F043990	Metagenome	155	N
F047127	Metagenome	150	N
F061925	Metagenome	131	N
F071327	Metagenome	122	N
F077781	Metagenome / Metatranscriptome	117	N
F084342	Metagenome	112	N

Family

Category

Number of Sequences

3D Structure?

F043990

Metagenome

155

F047127

Metagenome

150

F061925

Metagenome

131

F071327

Metagenome

122

F077781

Metagenome / Metatranscriptome

117

F084342

Metagenome

112

Scaffold	Taxonomy	Length	IMG/M Link
Ga0114874_100334	All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium → Fusobacterium periodonticum	16175	Open in IMG/M
Ga0114874_101741	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4161	Open in IMG/M
Ga0114874_105183	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus	1427	Open in IMG/M
Ga0114874_105219	All Organisms → cellular organisms → Bacteria	1418	Open in IMG/M
Ga0114874_107505	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
Ga0114874_112559	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	581	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0114874_100334

All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium → Fusobacterium periodonticum

16175

Open in IMG/M

Ga0114874_101741

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

4161

Open in IMG/M

Ga0114874_105183

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus

1427

Open in IMG/M

Ga0114874_105219

All Organisms → cellular organisms → Bacteria

1418

Open in IMG/M

Ga0114874_107505

All Organisms → cellular organisms → Bacteria

970

Open in IMG/M

Ga0114874_112559

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan

581

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0114874_100334	Ga0114874_10033412	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMLLLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKSNQILTLKVLIITLVAALLFEYAYPWRIIFG*
Ga0114874_101741	Ga0114874_1017414	F043990	MIKKLGIIFTIGVIILGIAVYANHKIEKSWVEREFGVNTSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPEQFLNIANGYYKYVVDENDDRSFDILIVDTTRKEICIYYQIL*
Ga0114874_105183	Ga0114874_1051832	F047127	MKKTFAFILLSIISLAKAQLTNIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0114874_105219	Ga0114874_1052191	F084342	LRPPPRPCFAYAGCVAGRLFLLGGYLAIPIRRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWIHRRQILGICKEE*
Ga0114874_107505	Ga0114874_1075052	F061925	MSWEYSINLDSEESASSVVTDLKICELFCSSTTDYIDWKNPKSIDSIPYDARFYTDKKKTIYITINSFSKNIFSALKSILAKQNYHLTNCDTDEEVTLEHIFRSVI*
Ga0114874_112559	Ga0114874_1125591	F077781	PARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRDGALSVRPADSLSLGFPRPHPGTPGLGRFCPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*

Scaffold ID

Protein ID

Family

Sequence

Ga0114874_100334

Ga0114874_10033412

F071327

MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMLLLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKSNQILTLKVLIITLVAALLFEYAYPWRIIFG*

Ga0114874_101741

Ga0114874_1017414

F043990

MIKKLGIIFTIGVIILGIAVYANHKIEKSWVEREFGVNTSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPEQFLNIANGYYKYVVDENDDRSFDILIVDTTRKEICIYYQIL*

Ga0114874_105183

Ga0114874_1051832

F047127

MKKTFAFILLSIISLAKAQLTNIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*

Ga0114874_105219

Ga0114874_1052191

F084342

LRPPPRPCFAYAGCVAGRLFLLGGYLAIPIRRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWIHRRQILGICKEE*

Ga0114874_107505

Ga0114874_1075052

F061925

MSWEYSINLDSEESASSVVTDLKICELFCSSTTDYIDWKNPKSIDSIPYDARFYTDKKKTIYITINSFSKNIFSALKSILAKQNYHLTNCDTDEEVTLEHIFRSVI*

Ga0114874_112559

Ga0114874_1125591

F077781

PARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRDGALSVRPADSLSLGFPRPHPGTPGLGRFCPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008302: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 338793263 reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences