NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008306

3300008306: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764305738 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008306 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053234 | Ga0115184
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 764305738 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size90090399
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F032313Metagenome180N
F067846Metagenome125Y
F080164Metagenome115N
F089055Metagenome109Y
F089057Metagenome109N
F103431Metagenome101N
F103433Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0115184_1000071All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus36265Open in IMG/M
Ga0115184_1000416All Organisms → cellular organisms → Bacteria13067Open in IMG/M
Ga0115184_1003343All Organisms → cellular organisms → Bacteria3655Open in IMG/M
Ga0115184_1003696All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae3409Open in IMG/M
Ga0115184_1003984All Organisms → Viruses → Predicted Viral3225Open in IMG/M
Ga0115184_1006456All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2204Open in IMG/M
Ga0115184_1014487All Organisms → cellular organisms → Bacteria → Proteobacteria1144Open in IMG/M
Ga0115184_1027886Not Available666Open in IMG/M
Ga0115184_1035094Not Available546Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0115184_1000071Ga0115184_10000716F067846MESQQAQWERKTFNDWDKQCSKEDDYNRAIEMEIEAIKEDIANNDSDALCAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND*
Ga0115184_1000416Ga0115184_10004162F103433MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAVDSKEMMSQDCNPSQVEPYVSQYGLQARVIAGLSPNDTSKIPAYIKRVSIFLALLTAFLLALVVQKIRALFGGITASVFVVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLAPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINAKASYRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGYALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0115184_1003343Ga0115184_10033434F089055LKVEKMSSTPECVTKTPEIEAREKLAAIFSDAEQRDNSKVNPELGKTAFDVANIPNNEAVYLCNQTLGSYGKSLDRINKNPLEVVQTIGTSLQHLR
Ga0115184_1003696Ga0115184_10036962F080164MVGLTLCAAPQVTLRERANAFPLITEKDATEVDAPYAWRLPVVPLSLDNREIRNFAKFPLLPSLSGGILTVRVLVVGDTVAVPRDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDKSRQAVDEQVTLHLPGFEKAEKPLHYKEQTGQLVLCEYYESHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEMELEDGTKLSTSLQHYDEQTSILDHPDRS*
Ga0115184_1003984Ga0115184_10039849F067846EAIKENISNCDDDVICSFREKMLDYCEVINAFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLDQLERDYRNGYILND*
Ga0115184_1006456Ga0115184_10064561F026592SPQGIAALASQGSVAPLTEQSDATFSVGQFSSADRE*
Ga0115184_1014487Ga0115184_10144871F103431MIDLDALVVGMLFFIQLFLQGITWRVAIAHFLHAERGNAAAAAFDGAFGENIADCHAEDDNDKNAESKEEGFHVCIPEG*
Ga0115184_1027886Ga0115184_10278861F089057LIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIITSNDKYSEVLSNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLAKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIVNKDIDKLASLCTGYLAITKDEVLVKNLMNESATMAFQYMSEEDIHNVVDDINSRSVLARYLSRM*
Ga0115184_1035094Ga0115184_10350941F032313EQEKHEVPVPKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMLTSKISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWVTTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEEK
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