Sample 3300008331

Overview

Basic Information
IMG/M Taxon OID	3300008331 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0053215 \| Ga0114894
Sample Name	Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764224817 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	65084660
Sequencing Scaffolds	10
Novel Protein Genes	10
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	National Institutes of Health, USA
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F068942	Metagenome	124	N
F077404	Metagenome	117	N
F077781	Metagenome / Metatranscriptome	117	N
F084342	Metagenome	112	N
F097490	Metagenome	104	N
F098763	Metagenome	103	N
F101358	Metagenome	102	Y

Family

Category

Number of Sequences

3D Structure?

F040149

Metagenome

162

F043235

Metagenome

156

F045567

Metagenome

152

F068942

Metagenome

124

F077404

Metagenome

117

F077781

Metagenome / Metatranscriptome

117

F084342

Metagenome

112

F097490

Metagenome

104

F098763

Metagenome

103

F101358

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0114894_101175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	4483	Open in IMG/M
Ga0114894_101232	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4372	Open in IMG/M
Ga0114894_102339	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3162	Open in IMG/M
Ga0114894_103151	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2676	Open in IMG/M
Ga0114894_103922	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	2334	Open in IMG/M
Ga0114894_105945	Not Available	1778	Open in IMG/M
Ga0114894_106481	Not Available	1675	Open in IMG/M
Ga0114894_107122	Not Available	1570	Open in IMG/M
Ga0114894_114255	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	945	Open in IMG/M
Ga0114894_126238	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	580	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0114894_101175

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces

4483

Open in IMG/M

Ga0114894_101232

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279

4372

3162

2676

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis

2334

Open in IMG/M

Ga0114894_105945

Not Available

1778

Open in IMG/M

Ga0114894_106481

Not Available

1675

Open in IMG/M

Ga0114894_107122

Not Available

1570

Open in IMG/M

Ga0114894_114255

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

945

Open in IMG/M

Ga0114894_126238

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan

580

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0114894_101175	Ga0114894_1011752	F068942	MIRKILSLPTLALCFTLGSALFAGCNEDYIKNTETKVRWSNVKNPEYGEYINIRLKAEGETFTTVGDHSWISFSNDASTLDTFTRHRFSEVDKDTAYYKDIVIYMTRNEREQTTTLKLVAPPNRTQQPKQFKFSVSVTPPAMYMFKVHQPALPAKAQ*
Ga0114894_101232	Ga0114894_1012324	F045567	VHTSTHRVEDALLPVDGDILTPRDGTHIVQTERMVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0114894_102339	Ga0114894_1023392	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLFPGSTH*
Ga0114894_103151	Ga0114894_1031514	F098763	MNGRTSLRILSTALYLATKLFEAVVRTTISYDPSDEVEGKGGMNAIPTAVDE*
Ga0114894_103922	Ga0114894_1039222	F101358	MTEKYSASLPPRQPEYLLTQPITTDGTPKECATHPDTHSIPKRDDVPQHLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTTHQNDSTDEQETEILPTQSDNTYDHLDGDSTRRLVGSVAAKASGEVDNSSLVRRALGRVR*
Ga0114894_105945	Ga0114894_1059452	F084342	VSAQCGAKLFLLGGYLAIPICRPFFAKALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0114894_106481	Ga0114894_1064813	F040149	VADEGAKEFRWKVLIKEQGIPVLFIEVEAWYDRWVSSSEILGSVGIALEREPRLAPIWSHDSEDAIDYFIYDVLVPEGHALTAVRERETVVMQLLNIHRMF*
Ga0114894_107122	Ga0114894_1071222	F077404	RKKPTQIGNTKNPFAMNTLKTIFTFFFTLCFMMVANGYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYTFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFW*
Ga0114894_114255	Ga0114894_1142552	F097490	MELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVYIWDDICKEEYYAMREIVLLPKKSVKKIKYKYDNEEYIEIVHIGFPYNGYYNEIGKKMQFMLKKKLDS
Ga0114894_126238	Ga0114894_1262381	F077781	PARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPGAGALSVRTADSLSLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*

Scaffold ID

Protein ID

Family

Sequence

Ga0114894_101175

Ga0114894_1011752

F068942

MIRKILSLPTLALCFTLGSALFAGCNEDYIKNTETKVRWSNVKNPEYGEYINIRLKAEGETFTTVGDHSWISFSNDASTLDTFTRHRFSEVDKDTAYYKDIVIYMTRNEREQTTTLKLVAPPNRTQQPKQFKFSVSVTPPAMYMFKVHQPALPAKAQ*

Ga0114894_101232

Ga0114894_1012324

F045567

VHTSTHRVEDALLPVDGDILTPRDGTHIVQTERMVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*

Ga0114894_102339

Ga0114894_1023392

F043235

MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLFPGSTH*

Ga0114894_103151

Ga0114894_1031514

F098763

MNGRTSLRILSTALYLATKLFEAVVRTTISYDPSDEVEGKGGMNAIPTAVDE*

Ga0114894_103922

Ga0114894_1039222

F101358

MTEKYSASLPPRQPEYLLTQPITTDGTPKECATHPDTHSIPKRDDVPQHLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTTHQNDSTDEQETEILPTQSDNTYDHLDGDSTRRLVGSVAAKASGEVDNSSLVRRALGRVR*

Ga0114894_105945

Ga0114894_1059452

F084342

VSAQCGAKLFLLGGYLAIPICRPFFAKALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE*

Ga0114894_106481

Ga0114894_1064813

F040149

VADEGAKEFRWKVLIKEQGIPVLFIEVEAWYDRWVSSSEILGSVGIALEREPRLAPIWSHDSEDAIDYFIYDVLVPEGHALTAVRERETVVMQLLNIHRMF*

Ga0114894_107122

Ga0114894_1071222

F077404

RKKPTQIGNTKNPFAMNTLKTIFTFFFTLCFMMVANGYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYTFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFW*

Ga0114894_114255

Ga0114894_1142552

F097490

MELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVYIWDDICKEEYYAMREIVLLPKKSVKKIKYKYDNEEYIEIVHIGFPYNGYYNEIGKKMQFMLKKKLDS

Ga0114894_126238

Ga0114894_1262381

F077781

PARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPGAGALSVRTADSLSLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008331: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764224817 reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences