Sample 3300008364

Overview

Basic Information
IMG/M Taxon OID	3300008364 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0053211 \| Ga0114890
Sample Name	Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763577454 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	105224851
Sequencing Scaffolds	9
Novel Protein Genes	9
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus parasanguinis	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	National Institutes of Health, USA
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F045567	Metagenome	152	N
F077781	Metagenome / Metatranscriptome	117	N
F084342	Metagenome	112	N
F097525	Metagenome	104	N
F097527	Metagenome	104	N
F101359	Metagenome	102	N
F103431	Metagenome	101	N
F103434	Metagenome	101	N
F105377	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

F045567

Metagenome

152

F077781

Metagenome / Metatranscriptome

117

F084342

Metagenome

112

F097525

Metagenome

104

F097527

Metagenome

104

F101359

Metagenome

102

F103431

Metagenome

101

F103434

Metagenome

101

F105377

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0114890_102489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus parasanguinis	6379	Open in IMG/M
Ga0114890_112625	All Organisms → Viruses	1434	Open in IMG/M
Ga0114890_114520	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1251	Open in IMG/M
Ga0114890_115351	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1184	Open in IMG/M
Ga0114890_117873	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1026	Open in IMG/M
Ga0114890_120991	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	883	Open in IMG/M
Ga0114890_125401	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	739	Open in IMG/M
Ga0114890_134827	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae	547	Open in IMG/M
Ga0114890_134833	All Organisms → cellular organisms → Bacteria → Proteobacteria	546	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0114890_102489

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus parasanguinis

6379

Open in IMG/M

Ga0114890_112625

All Organisms → Viruses

1434

Open in IMG/M

Ga0114890_114520

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

1251

Open in IMG/M

Ga0114890_115351

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium

1184

Open in IMG/M

Ga0114890_117873

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae

1026

Open in IMG/M

Ga0114890_120991

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae

883

Open in IMG/M

Ga0114890_125401

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

739

Open in IMG/M

Ga0114890_134827

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae

547

Open in IMG/M

Ga0114890_134833

All Organisms → cellular organisms → Bacteria → Proteobacteria

546

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0114890_102489	Ga0114890_1024891	F097527	MIYFKMEKIGNSTYNKEKKTRYENLVFITIPAAGVEP
Ga0114890_112625	Ga0114890_1126252	F105377	VRAEMRDFDKLPLLTPEEAFERAMEMGWNRPLFDHGYRVRGLNDWRAIETLLRQYDVEDAVIASFGLKRFEEILDAFAMLHERGWRLWQTSANVYVDGELRAVPAIRAHYRGD*
Ga0114890_114520	Ga0114890_1145202	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQRQSFTDSYKETVK*
Ga0114890_115351	Ga0114890_1153512	F097525	MQQKKIMFKIQNAHQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYGKEPYQLTFSLDDKTLAMIIKELGEAVASFKKK*
Ga0114890_117873	Ga0114890_1178732	F084342	VFLLGGYLAVPIRRPFFAQSLKKTLGQERGLGDAYDKDYQNEKALQWIHQRHILGICKEE
Ga0114890_120991	Ga0114890_1209911	F045567	VHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAPTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0114890_125401	Ga0114890_1254012	F103434	RAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPDSLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR*
Ga0114890_134827	Ga0114890_1348272	F077781	PPIAAPARPASAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPSAGALSVRTADSLYLGFPRPHPGTPGLGRFWAFLALQSLSETPSHARMPRVTVARTPPETLEISPLRAAT*
Ga0114890_134833	Ga0114890_1348332	F103431	MLFFIQLFLQGIAWRIAIAHFLHTERGNAAAAAFDGAFGENIADCHAEDDKDKDTESKEEGFHVCIPEG*

Scaffold ID

Protein ID

Family

Sequence

Ga0114890_102489

Ga0114890_1024891

F097527

MIYFKMEKIGNSTYNKEKKTRYENLVFITIPAAGVEP

Ga0114890_112625

Ga0114890_1126252

F105377

VRAEMRDFDKLPLLTPEEAFERAMEMGWNRPLFDHGYRVRGLNDWRAIETLLRQYDVEDAVIASFGLKRFEEILDAFAMLHERGWRLWQTSANVYVDGELRAVPAIRAHYRGD*

Ga0114890_114520

Ga0114890_1145202

F101359

MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQRQSFTDSYKETVK*

Ga0114890_115351

Ga0114890_1153512

F097525

MQQKKIMFKIQNAHQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYGKEPYQLTFSLDDKTLAMIIKELGEAVASFKKK*

Ga0114890_117873

Ga0114890_1178732

F084342

VFLLGGYLAVPIRRPFFAQSLKKTLGQERGLGDAYDKDYQNEKALQWIHQRHILGICKEE

Ga0114890_120991

Ga0114890_1209911

F045567

VHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAPTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*

Ga0114890_125401

Ga0114890_1254012

F103434

RAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPDSLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR*

Ga0114890_134827

Ga0114890_1348272

F077781

PPIAAPARPASAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPSAGALSVRTADSLYLGFPRPHPGTPGLGRFWAFLALQSLSETPSHARMPRVTVARTPPETLEISPLRAAT*

Ga0114890_134833

Ga0114890_1348332

F103431

MLFFIQLFLQGIAWRIAIAHFLHTERGNAAAAAFDGAFGENIADCHAEDDKDKDTESKEEGFHVCIPEG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008364: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763577454 reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences