NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008412

3300008412: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 638754422 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008412 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053243 | Ga0115193
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 638754422 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size187536378
Sequencing Scaffolds14
Novel Protein Genes14
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030786Metagenome184N
F036281Metagenome170N
F041827Metagenome159Y
F047127Metagenome150N
F054111Metagenome140N
F057446Metagenome136N
F061925Metagenome131N
F061926Metagenome131N
F063778Metagenome129Y
F064818Metagenome128N
F070224Metagenome123N
F081456Metagenome114N
F084362Metagenome112N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0115193_1000146Not Available46287Open in IMG/M
Ga0115193_1000160All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae43994Open in IMG/M
Ga0115193_1000430All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes19306Open in IMG/M
Ga0115193_1001971All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes6435Open in IMG/M
Ga0115193_1002266All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales5859Open in IMG/M
Ga0115193_1003779All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae4210Open in IMG/M
Ga0115193_1005716All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae3236Open in IMG/M
Ga0115193_1007752All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces2678Open in IMG/M
Ga0115193_1011261All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces2098Open in IMG/M
Ga0115193_1011356All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae2084Open in IMG/M
Ga0115193_1031028All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1066Open in IMG/M
Ga0115193_1031599All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1053Open in IMG/M
Ga0115193_1032225All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1039Open in IMG/M
Ga0115193_1064884All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium635Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0115193_1000146Ga0115193_100014657F084362MNCTFTVRWSDEKNKPHAKTYATEPAAKKAKKWLLEHGIRNVDIAVKINNKPAGSLKDDKPPETEAEQKGFWWEK*
Ga0115193_1000160Ga0115193_10001609F070224MKRLLFLLLTLLHCTAWSQVYNAPDSIYVASGAVYIPPISGESIYLLASPLKSGHTPGSKIRTRDWVKVDYSDRNNIIVRKVGGSLIIENLFIYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFTRMPTALRELKKYKLPRTRRSSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYDHPEACIIH*
Ga0115193_1000430Ga0115193_100043025F081456LGYRLFLEKGAHMFEEPPIYYILISLIFLIIFGAIGFATWLVWLTPISFMTKLVMTAIGFLLCAITVILYTISAE*
Ga0115193_1001971Ga0115193_10019719F036281MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPTPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTITNAKGHQSYDWVLKNVEWAADTIRYF*
Ga0115193_1002266Ga0115193_10022667F030786MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGNAMGAKKASKISFADITDGDKSKVVAIKVKYLDDDGVDKIFENNNNRILNTINSQHISFNSQTAEYSKPQLFLLYQSLKVDC*
Ga0115193_1003779Ga0115193_10037792F057446MNSISFGKTTITSYPEYFEIVENKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0115193_1005716Ga0115193_10057165F061925MSWEYSINLDSEESVSSVVTDLKICELFSSSTTDYIDWKNPESIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHSYFLTDCDTDEEVTLEHIFRSVI*
Ga0115193_1007752Ga0115193_10077524F063778MPETISEGAKQQLLQQLQDALGLVKNADTSAQDVAAITQSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAIGNIEAIPLDPPPED*
Ga0115193_1011261Ga0115193_10112612F063778MPETISEGAQQQLLQQLQEALGLVADADTSAHDVAAITHSAADGHQLTEVMLQEMTAARGYLKSCADQIEYAISNIEAIPLDPPPDD*
Ga0115193_1011356Ga0115193_10113564F064818MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYEGFYLQLASYNKEVGDFFEQEMGNSFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLKNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0115193_1031028Ga0115193_10310281F047127MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIINIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0115193_1031599Ga0115193_10315991F061926MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIRVNEYFSYFSSYKIFVSERIVLLWQSRAPPVFS*
Ga0115193_1032225Ga0115193_10322252F041827MKHFLSILALGCLLLSCNRDLENNENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDNQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRFIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPTYDEYLYEISANRSY
Ga0115193_1064884Ga0115193_10648842F054111MVFKNLGKENMNKPLNNITHEVFLKLIEHLKNLQEFTFLEYIMAPEADIFYFNFMEKIVKIKWDLDYGLSLETKSLSTSDKDLFLNILH
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