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Sample 3300008414
3300008414: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 686765762 reassembly
Overview
Basic Information
IMG/M Taxon OID 3300008414 Open in IMG/M GOLD Reference Gs0063646 | Gp0053260 | Ga0115230 Sample Name Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 686765762 reassembly Sequencing Status Permanent Draft Sequencing Center Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis Published? N Use Policy Open
Dataset Contents
Total Genome Size 24153383 Sequencing Scaffolds 2 Novel Protein Genes 2 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes 1 All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal surface
Location Information
Location National Institutes of Health, USA Coordinates Lat. (o ) N/A Long. (o ) N/A Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F027205 Metagenome 195 N F105380 Metagenome 100 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0115230_100391 All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes 7878 Open in IMG/M Ga0115230_101386 All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium 2026 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0115230_100391 Ga0115230_1003911 F027205 VKGPRGLPLIERTHVASRLIVSADDILKAVKESEAFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK* Ga0115230_101386 Ga0115230_1013863 F105380 ITMTIVELDTSQYVKQGRIFKKFESNLLDSYMDGRQTKYNINLADLDDQISDGIVYADKTGKMIYKFSAKKIVQTAITKDLTISGLADEFKMDYYSFWVPDIYLLSYSGFNPGNGLCLAYRKKYEEYICLTNIFPERREQENSYFPNGKKLETKSICTGSMMADIDSAEYAAWKNDAVTRASQYVNKFLSARGNADLNFVSSSLRSKVPSHDMKKFAEFLGSITKEQENVNTYEEFIEWTKNTKWLK*
