NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008415

3300008415: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765013792 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008415 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053255 | Ga0115225
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 765013792 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size63663195
Sequencing Scaffolds13
Novel Protein Genes20
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2794
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes4
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria subflava1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F036281Metagenome170N
F043991Metagenome155N
F049707Metagenome146N
F051214Metagenome144N
F053092Metagenome141N
F055792Metagenome138N
F067847Metagenome125N
F071328Metagenome122N
F074985Metagenome119N
F077404Metagenome117N
F090517Metagenome108N
F095632Metagenome105N
F098763Metagenome103N
F101360Metagenome102N
F103431Metagenome101N
F103434Metagenome101N
F105376Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0115225_100022All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27997348Open in IMG/M
Ga0115225_100089All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes44539Open in IMG/M
Ga0115225_100092All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes44008Open in IMG/M
Ga0115225_100098All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27942868Open in IMG/M
Ga0115225_100241All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27923692Open in IMG/M
Ga0115225_100243Not Available23655Open in IMG/M
Ga0115225_101497All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia6251Open in IMG/M
Ga0115225_101727All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria subflava5538Open in IMG/M
Ga0115225_103191All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3214Open in IMG/M
Ga0115225_104665All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2273Open in IMG/M
Ga0115225_105077All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2792103Open in IMG/M
Ga0115225_111413Not Available984Open in IMG/M
Ga0115225_115031Not Available756Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0115225_100022Ga0115225_10002241F055792MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALKRDLAIDSTLEEVRTVFVDESDDGAEASTTWSRYPLETLQKEGYILFEGRMLTCEARGVDSRSSVKSLDLEPRIIGEAIEPVALPHVARLDESIALQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMSIIARKYQLFHTFVS*
Ga0115225_100089Ga0115225_10008933F067847MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVANFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELKNL*
Ga0115225_100089Ga0115225_10008940F018385MMAEYENQWGPYKEHSIEKDRNPALDDPIIYGVNVKHFTVTVYSQDGRVNKYWNVRILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSNRKTISRLYHEEVK*
Ga0115225_100089Ga0115225_10008943F051214MPGKIVAHDTHLRIDTEFIELNDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0115225_100089Ga0115225_10008944F043991MSKKNPSVVDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0115225_100089Ga0115225_10008947F027205VASRLIVSADDILKAVKESEEFERKALGEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0115225_100089Ga0115225_10008948F036281MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDRWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYSAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0115225_100089Ga0115225_10008949F074985MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYAEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFKKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0115225_100092Ga0115225_1000922F101360VSKKSAARRAAIAAHIAKVASQEKKKALKELEEYMEPGDTTKPQVDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISTAQEEAIRELISTGDISILEIEGGDA*
Ga0115225_100092Ga0115225_10009231F103434VVEVTLAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTEAR*
Ga0115225_100098Ga0115225_10009826F053092MQSDQGLILCLTHALLVLGALILEPAEMEDTVDDHTVQLFGVLVAKELGIATHRIKADEHVPRDHIPLTLVEGDDISIVVMIEKVLIGLQDALITTELVAELADTTVIARSDLTDPVAKDTLSEARLLDIFVCIVSYKLRFFRHK*
Ga0115225_100241Ga0115225_1002414F090517MNRRILSFCGLLLGLLFLASSCKKDTPLPPQLSEGELRQTVWNGTLEHKNAKRDSYSVYLNFLSDSEVEVSGYDLKDPTYPRDVQVRYYYTITDRILTLKAQVNRELHPPMDQNTWYLIRKEPSLLVFQANAGNPDREATLTLRRKL*
Ga0115225_100243Ga0115225_10024315F105376MDNTDKEVSAKEFGALGADVIHIKESVDRHTVTLERIENIARANVTQAQLKAYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTQVRRK*
Ga0115225_101497Ga0115225_1014977F103434MVGHRPRRGRFLENGPHAVEVTVAVVKEGRTGRRYERGETFYVDKVLVQPSAGNALKATENRVIRGDLTDETTLKVLGTGRKWPGGPHSWVKIIKGPASLEGKTFQQAGEPLTYDASPMTRHWAVRCDTLGTDAK*
Ga0115225_101727Ga0115225_1017277F103431MNKYSTTTLMIDLDALIVGMLFFIQLFLQGIAWRIAIAHFLHTERGNAAAAAFNGAFGENIADCHAEDDKDKDTESKEEGFHVCIPEG*
Ga0115225_103191Ga0115225_1031913F049707VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFTERWATFDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKVS*
Ga0115225_104665Ga0115225_1046652F095632MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSMKTPQTN*
Ga0115225_105077Ga0115225_1050773F098763MDRRASLRILSPALHLTMKLFEAVVRTTISYDPSDEVESKRGMNAIPTAVDE*
Ga0115225_111413Ga0115225_1114131F077404LHRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFW*
Ga0115225_115031Ga0115225_1150311F071328MKWEFILEGEYIVEFVKLCKHLVLERTIDPNKHQAAAIYLRYSSQLLLKKRRAIRRLGIEKKYVSAILRQYGIHYIEYGDNEHRVFFLDRGINLYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW*
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