Sample 3300008436

Overview

Basic Information
IMG/M Taxon OID	3300008436 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0053301 \| Ga0115418
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 370425937 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	102493014
Sequencing Scaffolds	26
Novel Protein Genes	30
Associated Families	27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	National Institutes of Health, USA
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F046432	Metagenome	151	Y
F046433	Metagenome	151	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F058221	Metagenome	135	N
F061926	Metagenome	131	N
F063777	Metagenome	129	N
F067846	Metagenome	125	Y
F068942	Metagenome	124	N
F071328	Metagenome	122	N
F073671	Metagenome	120	N
F077404	Metagenome	117	N
F078842	Metagenome	116	N
F080164	Metagenome	115	N
F081510	Metagenome	114	N
F084342	Metagenome	112	N
F085820	Metagenome	111	N
F094006	Metagenome	106	Y
F094007	Metagenome	106	N
F097525	Metagenome	104	N
F098763	Metagenome	103	N
F099454	Metagenome	103	N
F103432	Metagenome	101	N
F103436	Metagenome	101	Y
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0115418_100009	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	341303	Open in IMG/M
Ga0115418_100022	Not Available	233724	Open in IMG/M
Ga0115418_100121	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	81686	Open in IMG/M
Ga0115418_100200	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	58462	Open in IMG/M
Ga0115418_100271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	45100	Open in IMG/M
Ga0115418_100297	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	42214	Open in IMG/M
Ga0115418_100380	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	32156	Open in IMG/M
Ga0115418_100423	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	29149	Open in IMG/M
Ga0115418_100428	All Organisms → cellular organisms → Bacteria	28859	Open in IMG/M
Ga0115418_101299	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	8532	Open in IMG/M
Ga0115418_102173	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	5490	Open in IMG/M
Ga0115418_102407	All Organisms → cellular organisms → Bacteria	5025	Open in IMG/M
Ga0115418_102761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	4474	Open in IMG/M
Ga0115418_103604	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3657	Open in IMG/M
Ga0115418_103831	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3486	Open in IMG/M
Ga0115418_104881	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	2856	Open in IMG/M
Ga0115418_104952	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2828	Open in IMG/M
Ga0115418_105396	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	2629	Open in IMG/M
Ga0115418_105938	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2432	Open in IMG/M
Ga0115418_106940	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2143	Open in IMG/M
Ga0115418_107754	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1942	Open in IMG/M
Ga0115418_108186	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1856	Open in IMG/M
Ga0115418_110588	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1485	Open in IMG/M
Ga0115418_111991	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1333	Open in IMG/M
Ga0115418_112271	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1303	Open in IMG/M
Ga0115418_115070	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1088	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115418_100009	Ga0115418_100009221	F097525	MQQKKIMFKIQNAYQKIIFSIHGNRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLDLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFKKGIMMKKHEL*
Ga0115418_100009	Ga0115418_10000961	F063777	MKILNIKISALPPENNSFWMKLLLFLCIPFLFIFAILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKENYLPDENSQEYKIFNDFCAKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDVGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKIINGYNNNEQIEIAISE*
Ga0115418_100022	Ga0115418_100022144	F105378	MKVSVYVDKLKKWVPISSDEILDRNKNLSDVKDKNAAITNLGLYDKFISKEALQSGFLPDVFTPENIQTDADHQFVSDSDKNNWNNKLNKPVEIQTNLEENQIGYDEVNEKFYIGLNNKNVLIGGASALDNIKIVNGFFSGNSQPTIIRNTKTREDGTLISPAFVDVQCVEYTGGDLGEVSVSYTSELINIYNTGSFTGAFQCMIVYPLGSVNR*
Ga0115418_100121	Ga0115418_10012117	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0115418_100121	Ga0115418_10012188	F058221	MRNKMGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLKIGSAKLLSNALLKKVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI*
Ga0115418_100200	Ga0115418_10020039	F081510	MKLPKLNVKAIKAGAKTTYNTAKILGKKYAPIALVTTGLVGYGIAVYQGIKSGKKLEATKAKYEAKDAAGEEYTRLEVIKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKIDTPMDQVTVEEDGKEAQSFVPKEGLMYGNWFKYSANYASDSPEYNEQWIRESIRVLEEKIARKGLLNFSDMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNAEEQVHEPQIYVRWKCPRNLYATTNFRDLIPGRKELA*
Ga0115418_100271	Ga0115418_10027150	F067846	MASFTAYDKAQEQYDAYGRAIEMEIESIKEDIANCDDDVICVFREKMLDYDEVINAFDDDTFNDDEFIKAVALGTDYEEIRIKILVAMAEDRLEQLEEDYRKGYILND*
Ga0115418_100271	Ga0115418_10027156	F073671	MNKEQLEHELAELHEKEQSLEKALELVREKIRELVNYTDKNKV*
Ga0115418_100297	Ga0115418_1002975	F077404	MNILKTAFAFFFALCFMMMGANSYAQKTESINAEASKNELKRNAVYLPPALEEYADTTLLHQRFNVENKGNYLYTLFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRRIKSDFSYGHPYQGFTAYDRVELSNFVQSYGRQAALETANAWVMAGYPFSLQSTKFENRYTRGRKLILTDGKTTLYLYFLMTDSVALNFDTEVLPYIKGVFRFNRIQ*
Ga0115418_100380	Ga0115418_10038015	F085820	MKSSFLTLFAMLFLATTFFSCETDEPAPRPTWGEIVNPIEAFMYPRDLKVYADDDDSRRWLILVLPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFRRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLSFYTYKQIFDCQFKCGDRSIFAKPLGEVVEADYQWLPGRDGFGLITPPNPDHLKQRIVLRLADGTEIEKELSEKGKK*
Ga0115418_100423	Ga0115418_10042314	F103432	MKLINSLFSFSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHLVSTTAAGLRVREPRRVVPMLPRQLHVTMEGKTLIRRHSLPSVSAYSFQVVAVGDTIYRQKESDAQFNADLDALFHESIGIAPRLFGVRELSVLGIDSRGKTRDLGNYSYPLLRGVRIYMAFRSREGVFHEHYEAARVDTFCVKDDWLLKTKAEPSLYVPSFRLLVWDQPADDYTKLRFTLTLVDGRSLVAEVPLY*
Ga0115418_100423	Ga0115418_10042315	F080164	MVGLTLSAAPQVTLRERASAFPLITEKEASEIYEPYAWRLPVVPLSLDNREIFNFVKYPTLPSLFGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPFLYKGQAGRLVLCEYYSSHRGDLLLDAANARPEIFGELNPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYGEQTSILDHPARS*
Ga0115418_100428	Ga0115418_10042836	F071328	MSRKHWTFINLIRYIEEYERNPLLIERMKWKFIPEGEGIVEFVKLCKHLVLERTIDSKESLTTAIYLRYSSQLLLKKKRAIRRLGIEKENISAILRQCGRHYKEYGDDEHRVFFLDTDVNIYFCKHYQLPMYIIQRIEFSNKESRPFILKILPVKRSEW*
Ga0115418_101299	Ga0115418_1012998	F068942	MIRKILTLPTLALCFTLGSALFAGCNEDYIKNTETKVRWSNVKNPKYGDPINITLKAEGETFTTVGDHSQIFFGYDASTLDTFTRHRFPEQDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFDFSIEVTPPGTYFFNVRQPALPAKAQ*
Ga0115418_102173	Ga0115418_1021734	F043235	MDQVVPSDEGHLLIDLCYDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLFPGSAH*
Ga0115418_102407	Ga0115418_1024076	F078842	MIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTAVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLKMADSARIRQMINSIELDIYEVNS*
Ga0115418_102761	Ga0115418_1027614	F103436	MSNKGWRGKTDSEIFDSLGDWVMKCDLKYSKSDALYKVKLAQCLWGEGEYIEALHLLDENEVFFEKSDWPYYALAIEILKARKHKFFNE*
Ga0115418_103604	Ga0115418_1036042	F053092	MQSAQGLILCFTHAFLILRALVLKPTEMEDTMDDHTVQLFGVLIAKEFGIATHRIEANEHVSRDHIPLTLIEGDDIGIVVVIEEILIGLQDALIATELVAKLADTAVIASSDLTDPVAKDTLSEARLLDVFVXXXXAVV*
Ga0115418_103831	Ga0115418_1038313	F098763	MDRRTSLRVLSTALYLATKLFKAVVWTTISYDPSDEVEGKGGMNAVPTAVDE
Ga0115418_104881	Ga0115418_1048812	F051213	MALTFVLTSCDPFSQNEPTIEGDRYKYFDSSAQRQSFRVVNGSGKQYNHKVDWHIIGILEENSSTYLTKKVDTLSNGDFRISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK*
Ga0115418_104952	Ga0115418_1049523	F040149	VADEGAKELRWKVLIEEQGIPVLFVEVEARYDSGIGSSEILRTIRLTLEREPRLTPVWSHDSEDAIDYFIYDVSIPERHTLTAVRERETVVAQLLNIHRLF*
Ga0115418_105396	Ga0115418_1053962	F084342	LGGYLAIPIRCPFFAKALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0115418_105938	Ga0115418_1059381	F094006	MRGALEPAGPTGALYEPAVSVEAHIGELQAGGIARRGLFAFGGSNVLAVAELGAKAPYAIDMYDIALCEPLSELFAEKLEYAFNFGA*
Ga0115418_106940	Ga0115418_1069403	F098763	MDRRASLRILSTALYLATKLFEAVVWATISYDSCDEVEGKGGMNAVPTAVDE*
Ga0115418_107754	Ga0115418_1077541	F094007	MKLKTVEVLELARPNRAGIIDVVDSDGNVVSLDYLGEDFVPDANSYSDKDFTKRNSIIVEMCDLLGGTRRRAGFAEYYRGRGDYDRARRIERNRGSDISEVGRLAINACEVCPLKLDCELYGKLGGAVLNKVIDYKRIRTATSLTKAGKKRPGWNKGCIDNDV*
Ga0115418_108186	Ga0115418_1081864	F046432	MWEMTESKLSNIISKYQLPMDDYLVEVDGAFGRGEFFWGFKNQSTNKKYLLVNTYSHHGVEAEVEYYREEGFDNLEAIPRRIETLENASDADDEISKYLFGMYSIFEMKP*
Ga0115418_110588	Ga0115418_1105881	F099454	MKASKLLWAVVMAFTFVFTSCDRLTDEPTLEDRGYYKYFDSTAQHKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK*
Ga0115418_111991	Ga0115418_1119914	F040149	VADEGAEELRWEVLIEEQGIPVLFVEVVAWYDGRVSSSEILSSVGIALEREPRLTAIWSHDSEDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0115418_112271	Ga0115418_1122711	F053092	MQSDQGLILCLTHALLVLGALILESAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVF
Ga0115418_115070	Ga0115418_1150701	F046433	MSELSTSPDALSELSPVAPPKLLSQAQDASRGNPMVYVKADNYLGTETSDPSFMKSRYKTTEYEAINDFVQFIETTKHYLPDYMENCAKELIDELAFLGMSELHFAATALAKRLRHHLEVDNKPVYVDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYKGRLKVYGGRGEIGKSSKILFLDDWIISGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDGSISAYSQYGGATYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIACCAIEGRILKGERIDRLTLPALVNIVRPYRNGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008436: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 370425937 reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences